Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24m02
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0041 + 4486623-4486855,4487002-4487036,4487132-4487253,448...    31   0.92 
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139...    30   1.6  
07_01_0277 - 2038757-2039542                                           30   2.1  
03_02_0815 + 11477618-11477845,11478206-11478337,11480227-114804...    29   4.9  
11_04_0420 - 17472120-17473487                                         28   6.5  
07_03_1045 + 23528768-23528879,23528979-23530399                       28   6.5  
07_01_0475 + 3588145-3588204,3588728-3588799,3588881-3588996,359...    28   8.6  

>10_02_0041 +
           4486623-4486855,4487002-4487036,4487132-4487253,
           4487496-4487585,4487711-4487830,4487941-4488024,
           4488123-4488200,4488349-4488474,4488564-4488653,
           4489183-4489218,4489294-4489349,4489569-4489716,
           4489797-4490130,4491249-4491384,4491595-4491636,
           4491725-4491893,4492471-4492554,4492660-4492755
          Length = 692

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +1

Query: 433 SFNDADFDVSDN-LLSNYLEEYDEVPWDALRYLFAIINYGGHITDDWDKRVLIAYINQF- 606
           SFN  D D  DN ++ + L    +  WD L   F  +++ GHI    D   +I  + Q+ 
Sbjct: 192 SFNVKDLDTVDNGVIEHLLPSLHKNDWDVLIAHFLGVDHAGHIF-GVDSTPMIQKLEQYN 250

Query: 607 -FCEEALDT 630
              E+ +DT
Sbjct: 251 RILEDVIDT 259


>01_06_1745 -
           39609894-39610030,39610127-39610223,39613856-39613996,
           39614094-39614272,39615067-39615111,39615802-39615858,
           39615935-39616163,39616348-39616418,39619527-39619635
          Length = 354

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
 Frame = +1

Query: 220 PLAVLQRSIKMTTEPPQGLKGNLVRIYANMNEDRFDEATPKYRR-----LLFCVS----F 372
           P   L     +  +   GLK + V+++  +N+++F   T   +R     + FC       
Sbjct: 51  PEDTLYHLTSVALDEAYGLKDSNVKVFVEVNDEKFAIGTLSSKRHPHIKVDFCFKKNFQL 110

Query: 373 FHCTLIARKRFRQLGYNAVYSFNDADFDVSDNLLSNYLEEYDEVPWDALRYLF 531
           FH +LI++  F       +  F D++ D SD  +   +  Y ++  D +R ++
Sbjct: 111 FHTSLISKVAFCGYQVKNLGKFTDSEGDESDEEVPPGIRLYPKL--DGIRLIY 161


>07_01_0277 - 2038757-2039542
          Length = 261

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 408 PEPLPGDQRAVEERDAEQEPPI 343
           P P+ GD  A EE++ E  PPI
Sbjct: 137 PPPIDGDAAAAEEKEPEHSPPI 158


>03_02_0815 +
           11477618-11477845,11478206-11478337,11480227-11480408,
           11480500-11480662,11481480-11481794
          Length = 339

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 444 IVEAVDGVVAELPEPLPGDQ---RAVEERDAEQEPPILRRRLVEAIL 313
           + E+V+ V    P P P      +A EE+D  +EPP+L  +L   +L
Sbjct: 238 VPESVESVAEFEPPPSPDSSYSIQAPEEKDFSKEPPVLPSQLHLGVL 284


>11_04_0420 - 17472120-17473487
          Length = 455

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -3

Query: 435 AVDGVVAELPEPLPGDQRAVEERDAEQEP 349
           AVD V  E  E  PG  RA EE   E EP
Sbjct: 267 AVDAVDMEENEMAPGSPRAEEEHGVEAEP 295


>07_03_1045 + 23528768-23528879,23528979-23530399
          Length = 510

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 447 GIVEAVDGVVAELPEPLPGDQRAVEERDAEQEPPILRRRLVEAILVH 307
           GI E +DG V  +P+   G+++ V +       P +RR L+  I +H
Sbjct: 242 GIPEELDGDVVTVPKRGSGNEKRVWKELILSPTPAMRRILLSGIGIH 288


>07_01_0475 +
           3588145-3588204,3588728-3588799,3588881-3588996,
           3590267-3590399,3590769-3590774
          Length = 128

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 298 YANMNEDRFDEATPKYRRLLFC-VSFFHCTLIARKRFRQLGYNAVYSFNDAD 450
           Y  +   RF+EA   YR +LF     + C +  +K       N  YS +D D
Sbjct: 56  YVLLKVGRFEEAEKTYRSMLFMNPDNYKCFIAIQKCLGLYSENGQYSTDDVD 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,375,423
Number of Sequences: 37544
Number of extensions: 292713
Number of successful extensions: 1161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)