Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24m02
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 109 2e-24
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 104 7e-23
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 104 7e-23
AL023830-1|CAA19472.1| 449|Caenorhabditis elegans Hypothetical ... 30 1.4
AL132848-5|CAB60389.2| 702|Caenorhabditis elegans Hypothetical ... 29 2.5
Z83232-3|CAE46672.1| 381|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z83232-2|CAB05754.2| 420|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z82071-1|CAB04917.1| 209|Caenorhabditis elegans Hypothetical pr... 28 5.8
AC024839-9|AAY86283.1| 89|Caenorhabditis elegans Hypothetical ... 28 7.7
AC024839-6|AAY86284.1| 89|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 109 bits (262), Expect = 2e-24
Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 2/181 (1%)
Frame = +1
Query: 91 EGGWVYLANCHLACAWLAGL--RLDASRVHARFRLWLSSLPDARFPLAVLQRSIKMTTEP 264
+G W+ L N HL + + L + H FRLWL++ DARFP +LQ+S+K+T EP
Sbjct: 3656 KGEWLCLNNLHLMLQAVPSIFKHLSLTTPHENFRLWLTTEGDARFPSMMLQQSLKITFEP 3715
Query: 265 PQGLKGNLVRIYANMNEDRFDEATPKYRRLLFCVSFFHCTLIARKRFRQLGYNAVYSFND 444
P G++ NL+R Y ++ + T + +F +++ H L R+ F G+ Y F
Sbjct: 3716 PPGVRNNLLRTYTQIDRSTKNVIT---CQSIFVLAWLHALLQERRTFIPQGWTKFYEFGA 3772
Query: 445 ADFDVSDNLLSNYLEEYDEVPWDALRYLFAIINYGGHITDDWDKRVLIAYINQFFCEEAL 624
+D V+ + + ++ W+ +R + + YGG I +D+D +VL +Y+N FC+E +
Sbjct: 3773 SDVRVAKSFVEQLTA--NKADWEFVRGILKFVIYGGRIENDFDFKVLDSYLNVLFCDEKI 3830
Query: 625 D 627
+
Sbjct: 3831 N 3831
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 104 bits (249), Expect = 7e-23
Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Frame = +1
Query: 88 REGGWVYLANCHLACAWLAGL--RLDASRVHARFRLWLSSLPDARFPLAVLQRSIKMTTE 261
+ G WV L N HLA +WLA L RL + + HA+FRL+L++ + P ++L+ S + E
Sbjct: 4037 KSGRWVLLKNVHLAPSWLAQLEKRLHSMKPHAQFRLFLTAEIHPKLPSSILRASRVVVFE 4096
Query: 262 PPQGLKGNLVRIYANMNEDRFDEATPKYRRLLFCVSFFHCTLIARKRFRQLGYNAVYSFN 441
P GLK NL+R +++ R +A + RL V + H + R R+ LG++ Y F+
Sbjct: 4097 PATGLKANLLRSLSSIPPQRLTKAPTERSRLYLLVCWLHALVQERLRYTPLGWSTAYEFS 4156
Query: 442 DADFDVSDNLLSNYLE---------EYDEVPWDALRYLFAIINYGGHITDDWDKRVLIAY 594
DAD V+ + L ++ E + +PW LR L + YGG I + +D+ +L
Sbjct: 4157 DADLRVACDTLDAAVDAVAQGRPNVEPERLPWTTLRTLLSQCIYGGKIDNQFDQVLLDCV 4216
Query: 595 INQFFCEEALD 627
+ F ++ +
Sbjct: 4217 LENLFTAKSFE 4227
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 104 bits (249), Expect = 7e-23
Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Frame = +1
Query: 88 REGGWVYLANCHLACAWLAGL--RLDASRVHARFRLWLSSLPDARFPLAVLQRSIKMTTE 261
+ G WV L N HLA +WLA L RL + + HA+FRL+L++ + P ++L+ S + E
Sbjct: 4037 KSGRWVLLKNVHLAPSWLAQLEKRLHSMKPHAQFRLFLTAEIHPKLPSSILRASRVVVFE 4096
Query: 262 PPQGLKGNLVRIYANMNEDRFDEATPKYRRLLFCVSFFHCTLIARKRFRQLGYNAVYSFN 441
P GLK NL+R +++ R +A + RL V + H + R R+ LG++ Y F+
Sbjct: 4097 PATGLKANLLRSLSSIPPQRLTKAPTERSRLYLLVCWLHALVQERLRYTPLGWSTAYEFS 4156
Query: 442 DADFDVSDNLLSNYLE---------EYDEVPWDALRYLFAIINYGGHITDDWDKRVLIAY 594
DAD V+ + L ++ E + +PW LR L + YGG I + +D+ +L
Sbjct: 4157 DADLRVACDTLDAAVDAVAQGRPNVEPERLPWTTLRTLLSQCIYGGKIDNQFDQVLLDCV 4216
Query: 595 INQFFCEEALD 627
+ F ++ +
Sbjct: 4217 LENLFTAKSFE 4227
>AL023830-1|CAA19472.1| 449|Caenorhabditis elegans Hypothetical
protein Y26E6A.1 protein.
Length = 449
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = -3
Query: 390 DQRAVEERDAEQEPPILRRRLVEAILVHVRVYTNQISFKALGRLRRHLDAPLQHGEREAR 211
D+ RD Q+P +L + L+ + + Q++ + L R+ RHL AP E R
Sbjct: 113 DEEVPNRRDVRQDPQVLEFANLFPRLIALDPHDAQLANQNLARMARHL-AP----ENYIR 167
Query: 210 VGQRRQPQA 184
V +R Q Q+
Sbjct: 168 VARREQRQS 176
>AL132848-5|CAB60389.2| 702|Caenorhabditis elegans Hypothetical
protein Y47H10A.1 protein.
Length = 702
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 383 VQWKNETQNRSRRYFGVASSKRSSF 309
V+WK + RS R+FG+ KR SF
Sbjct: 459 VKWKGDFCYRSHRWFGLDKEKRESF 483
>Z83232-3|CAE46672.1| 381|Caenorhabditis elegans Hypothetical
protein K04B12.2b protein.
Length = 381
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 396 PGDQRAVEERDAEQEPPILRRRLVEAIL 313
P D+R +EE +AE+E P+ R +VE ++
Sbjct: 273 PPDER-IEEDEAEEEDPLANREIVEQLM 299
>Z83232-2|CAB05754.2| 420|Caenorhabditis elegans Hypothetical
protein K04B12.2a protein.
Length = 420
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 396 PGDQRAVEERDAEQEPPILRRRLVEAIL 313
P D+R +EE +AE+E P+ R +VE ++
Sbjct: 312 PPDER-IEEDEAEEEDPLANREIVEQLM 338
>Z82071-1|CAB04917.1| 209|Caenorhabditis elegans Hypothetical
protein W05B5.1 protein.
Length = 209
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -3
Query: 444 IVEAVDGVVAELPEPLPGDQRAVEERDAEQEPPILRRRLVEA 319
+V D V+ E P P+P + E R PP+ +++ +A
Sbjct: 47 VVVTSDTVIPEAPSPIPPPAQFEEVRRVAVSPPLPSKKMTDA 88
>AC024839-9|AAY86283.1| 89|Caenorhabditis elegans Hypothetical
protein Y59E9AR.10 protein.
Length = 89
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 373 FHCTLIARKRFRQLGYNAVYSFNDADFDVSDNLLSNYLEEYDEVPWD 513
F C ++ LGY AV ++ F V + +N +++ D + WD
Sbjct: 2 FLCLVVVVVYLNALGYYAVLAYKFIYFCVQHDANANKIKDADPLDWD 48
>AC024839-6|AAY86284.1| 89|Caenorhabditis elegans Hypothetical
protein Y59E9AR.9 protein.
Length = 89
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 373 FHCTLIARKRFRQLGYNAVYSFNDADFDVSDNLLSNYLEEYDEVPWD 513
F C ++ LGY AV ++ F V + +N +++ D + WD
Sbjct: 2 FLCLVVVVVYLNALGYYAVLAYKFIYFCVQHDANANKIKDADPLDWD 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,134,721
Number of Sequences: 27780
Number of extensions: 220050
Number of successful extensions: 742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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