Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24m01
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    22   5.3  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   6.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   6.9  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.2  

>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 381 KPVLSKVYVLEYEQRVDFSWY 319
           K + S  YVL++E R   SW+
Sbjct: 410 KSMKSPTYVLKFEYRSMNSWF 430


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 149 PVPALGSGLG 120
           P+PALG GLG
Sbjct: 95  PMPALGFGLG 104


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 217 KHLLLHFTTR*FTHGHCDLFFSRKN 291
           +HL +H   R +   HC + FS  N
Sbjct: 208 RHLRVHTGERPYGCEHCSMKFSDSN 232


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 605 SRALYNRVSGAGAPDS 558
           S+ + N+ SGA APD+
Sbjct: 79  SQIIANKQSGAAAPDA 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,437
Number of Sequences: 336
Number of extensions: 3079
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)