Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24m01
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    28   1.4  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    26   4.3  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    26   5.7  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   5.7  
SPCC794.15 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.9  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   9.9  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   9.9  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   9.9  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    25   9.9  

>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 563 DSVLLFSPPFFLEAL*SDNPVRYP 492
           DS+  FSPP FLE L  ++ + YP
Sbjct: 216 DSISSFSPPTFLEQLVKEDILAYP 239


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 297 CNILSRKKKVTVSMCKLTSSEVQ 229
           CN +   KK+T++ C LTSS ++
Sbjct: 312 CNSVFDGKKLTIAKCLLTSSSIK 334


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 411 FCALCTQKPLKPVLSKVYVLEYEQRV 334
           FC++  + P +PV+S+V    YE+R+
Sbjct: 2   FCSISGETPKEPVISRVSGNVYEKRL 27


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 389 NPLNQYSQRSMFWSTNNGWIFRGIGRG 309
           N  + Y+ R   WST+  W+  G G G
Sbjct: 119 NQSHDYAVRCAEWSTDGRWLISGDGGG 145


>SPCC794.15 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 86

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 324 TKNPPVVRTPKHRPLRVLV 380
           TK PP V  P+H P   +V
Sbjct: 39  TKKPPFVSFPRHEPSETIV 57


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 385 GFLCTKRTKKSTLKRFYKEPSFFLS*AIYLLIPGR 489
           GF CT      T+KR+  E  F     + L+ PG+
Sbjct: 23  GFSCTVEKFSVTVKRYLAEGGFSHVYLVQLVFPGK 57


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 318 NTTKNPPVVRTPKHRPLRVLV*GVSVYKAHKKIYSK 425
           N     P+   P   P    V  VSV KA+ K+Y+K
Sbjct: 40  NIATQIPITLFPSVIPHGAFVEAVSVQKAYNKLYAK 75


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 274  FFSRKNIAGHDGPRPIPRKIHPLFVL 351
            FF+R+ IA + GP  +  KI  L +L
Sbjct: 1161 FFAREGIASYAGPSSLTAKITQLDIL 1186


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 450 FSKLSNLFTDTRSRGVTNRVVGLQSLQKERGGEEKDRVGRPRTRYSIIKSPTRLL 614
           F  L  L T ++     N++   +SLQ  R   + + + +PR  YS+  +P+ +L
Sbjct: 61  FGSLKGLVTQSKFGQWANKLS--KSLQARR--RKSESISKPRVYYSVFMAPSWVL 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,240
Number of Sequences: 5004
Number of extensions: 51149
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)