Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24m01
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634...    32   0.48 
04_03_0899 + 20662671-20662818,20663655-20663959,20664080-206642...    30   1.5  
10_08_1058 + 22608852-22609172,22609257-22610651                       29   3.4  
08_01_0322 - 2898272-2898475,2898548-2898730,2898817-2899702,290...    29   3.4  
01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735     29   3.4  
02_01_0302 - 2021221-2023305                                           29   4.5  

>08_02_0824 +
           21561699-21562415,21563294-21563362,21563424-21563459,
           21564533-21564600,21565259-21565277,21565662-21565763,
           21566173-21566288,21566501-21566595,21568093-21568264,
           21568413-21568493,21569732-21569801,21570106-21570132
          Length = 523

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 503 PGCRTTEPPERKGGRREGPSRAPPHP 580
           P  R   PP R G RR G  + PPHP
Sbjct: 19  PSRRRRRPPPRLGRRRGGDDQQPPHP 44


>04_03_0899 +
           20662671-20662818,20663655-20663959,20664080-20664265,
           20665200-20665274,20665596-20665652
          Length = 256

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 321 YWTRPIVPCNILSRKKKVTV 262
           +W  P+VPCN+L+ KK +T+
Sbjct: 222 HWHTPLVPCNMLTFKKGITL 241


>10_08_1058 + 22608852-22609172,22609257-22610651
          Length = 571

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 448 FFLS*AIYLLIPGRGG*RTGLSDYRASRKKGGEKRRTESGAPAPD 582
           FFL  A+YL   G GG ++ L  + A + +  +    + GAPAP+
Sbjct: 142 FFL--ALYLTSIGTGGVKSALLPFGAEQYERDDHDTDQEGAPAPE 184


>08_01_0322 -
           2898272-2898475,2898548-2898730,2898817-2899702,
           2902070-2902374
          Length = 525

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 482 PVEGGNEPGCRTTEPPERKGGRREGPSRAPP 574
           P  GG  PG   + P  R+G R+  P R PP
Sbjct: 43  PPRGGRVPGW--SSPERRRGRRKRPPERTPP 71


>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
          Length = 637

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 515 TTEPPERKGGRREGPSRAPPH 577
           +T PP RK      PSR+PPH
Sbjct: 266 STPPPRRKPSSPPAPSRSPPH 286


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +2

Query: 482 PVEGGNEPGCRTTEPPERKGGRREGPSRAP----PHPILDYKEP 601
           P  GG  P    + PP R+G   + PS +P    P P   Y  P
Sbjct: 393 PGRGGQGPPAPVSSPPRRRGPYPQPPSSSPTPSYPSPSSSYPAP 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,850,561
Number of Sequences: 37544
Number of extensions: 381624
Number of successful extensions: 1172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)