Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24m01
(673 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55856-5|AAA98023.1| 441|Caenorhabditis elegans Synaptotagmin p... 32 0.32
U55856-4|AAK68354.1| 443|Caenorhabditis elegans Synaptotagmin p... 32 0.32
L15302-1|AAA28145.1| 441|Caenorhabditis elegans synaptotagmin I... 32 0.32
AJ303370-1|CAC33881.1| 155|Caenorhabditis elegans synaptotagmin... 32 0.32
AJ303369-1|CAC33880.1| 153|Caenorhabditis elegans synaptotagmin... 32 0.32
U39652-8|AAK82909.1| 334|Caenorhabditis elegans Protein kinase ... 30 1.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 1.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 1.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 1.7
AF098985-4|AAC67422.2| 373|Caenorhabditis elegans Synaptotagmin... 29 4.0
U39652-7|AAA80405.2| 366|Caenorhabditis elegans Protein kinase ... 28 6.9
U39652-6|ABI18144.1| 376|Caenorhabditis elegans Protein kinase ... 28 6.9
J05220-1|AAA27980.1| 376|Caenorhabditis elegans protein ( C.ele... 28 6.9
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 27 9.2
AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical ... 27 9.2
>U55856-5|AAA98023.1| 441|Caenorhabditis elegans Synaptotagmin
protein 1, isoform a protein.
Length = 441
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 132 AEGRHWAQMAHETRKAVAMWHTL 200
AE RHW M R+ +A WHTL
Sbjct: 405 AELRHWMDMLASPRRPIAQWHTL 427
>U55856-4|AAK68354.1| 443|Caenorhabditis elegans Synaptotagmin
protein 1, isoform b protein.
Length = 443
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 132 AEGRHWAQMAHETRKAVAMWHTL 200
AE RHW M R+ +A WHTL
Sbjct: 407 AELRHWMDMLASPRRPIAQWHTL 429
>L15302-1|AAA28145.1| 441|Caenorhabditis elegans synaptotagmin I
protein.
Length = 441
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 132 AEGRHWAQMAHETRKAVAMWHTL 200
AE RHW M R+ +A WHTL
Sbjct: 405 AELRHWMDMLASPRRPIAQWHTL 427
>AJ303370-1|CAC33881.1| 155|Caenorhabditis elegans synaptotagmin 1
protein.
Length = 155
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 132 AEGRHWAQMAHETRKAVAMWHTL 200
AE RHW M R+ +A WHTL
Sbjct: 126 AELRHWMDMLASPRRPIAQWHTL 148
>AJ303369-1|CAC33880.1| 153|Caenorhabditis elegans synaptotagmin 1
protein.
Length = 153
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 132 AEGRHWAQMAHETRKAVAMWHTL 200
AE RHW M R+ +A WHTL
Sbjct: 124 AELRHWMDMLASPRRPIAQWHTL 146
>U39652-8|AAK82909.1| 334|Caenorhabditis elegans Protein kinase
protein 2, isoform b protein.
Length = 334
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = +2
Query: 482 PVEGGNEPGCRT----TEPPERKGGRREGPSRAP 571
P EGGN EPP+R GGRR G S P
Sbjct: 25 PKEGGNPDAADDDDIIVEPPKRSGGRRTGISAEP 58
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 482 PVEGGNEPGCRTTEPPERKGGRREGPSRAPP 574
P GG+ P T PP +R+ P R+PP
Sbjct: 315 PQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 345
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 482 PVEGGNEPGCRTTEPPERKGGRREGPSRAPP 574
P GG+ P T PP +R+ P R+PP
Sbjct: 336 PQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 366
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 482 PVEGGNEPGCRTTEPPERKGGRREGPSRAPP 574
P GG+ P T PP +R+ P R+PP
Sbjct: 321 PQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 351
>AF098985-4|AAC67422.2| 373|Caenorhabditis elegans Synaptotagmin
protein 6 protein.
Length = 373
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 141 RHWAQMAHETRKAVAMWHTL 200
RHW++ + + VAMWH L
Sbjct: 350 RHWSECVNHPEQPVAMWHKL 369
>U39652-7|AAA80405.2| 366|Caenorhabditis elegans Protein kinase
protein 2, isoform a protein.
Length = 366
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Frame = +2
Query: 488 EGGNEPGCRT----TEPPERKGGRREGPSRAP 571
EGGN EPP+R GGRR G S P
Sbjct: 59 EGGNPDAADDDDIIVEPPKRSGGRRTGISAEP 90
>U39652-6|ABI18144.1| 376|Caenorhabditis elegans Protein kinase
protein 2, isoform c protein.
Length = 376
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Frame = +2
Query: 488 EGGNEPGCRT----TEPPERKGGRREGPSRAP 571
EGGN EPP+R GGRR G S P
Sbjct: 69 EGGNPDAADDDDIIVEPPKRSGGRRTGISAEP 100
>J05220-1|AAA27980.1| 376|Caenorhabditis elegans protein (
C.elegans cAMP-dependentprotein kinase subunit R mRNA,
complete cds. ).
Length = 376
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Frame = +2
Query: 488 EGGNEPGCRT----TEPPERKGGRREGPSRAP 571
EGGN EPP+R GGRR G S P
Sbjct: 69 EGGNPDAADDDDIIVEPPKRSGGRRTGISAEP 100
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 506 GCRTTEPPERKGGRREGPSRAPPHPILDYKEPY 604
G R PP+R G R GP PP + ++PY
Sbjct: 431 GRRGGGPPQRDSGYRAGPQAMPP-SYRESRDPY 462
>AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical
protein Y53G8AM.8 protein.
Length = 789
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 405 ALCTQKPLKPVLSKVYVLEYEQRVDFSWYWTRPIVPC 295
A TQKP ++ + E +R+D S RP++PC
Sbjct: 54 ATVTQKPAGSTMATANITE-TRRIDISSCSDRPLIPC 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,771,685
Number of Sequences: 27780
Number of extensions: 313172
Number of successful extensions: 723
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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