Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24l21
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    28   0.91 
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    28   0.91 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.8  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    26   3.7  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    25   8.5  

>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 23/88 (26%), Positives = 35/88 (39%)
 Frame = +3

Query: 339 TITDMLDVIIKILQTPATCTMGLVFCLLWIGTLNAVSVDPCLNYREVEAVXVVHPREGLL 518
           T+  + DV  K+  TP     G        G +     D  L+Y EV +V   HP  G +
Sbjct: 309 TVLSLGDVCGKLELTPVAIAAGRRLSDRLFGGIK----DAHLDYEEVPSVVFAHPEAGTI 364

Query: 519 GALVNLEGEDFEMXGVMKVMICQTELIG 602
           G     E E  +  G  ++ +  T+  G
Sbjct: 365 GL---TEQEAIDKYGESQIKVYNTKFNG 389


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 179 QSDRLRLYNFSSVGEERQWIRDVLL 253
           Q D +R     S+ E RQWIRD+LL
Sbjct: 204 QKDIIRESLIPSIMESRQWIRDLLL 228


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 368  KDPTNTRYMYYGAGVLSTVDRYPERRVSRPMPQL 469
            KD T   Y YY +G +      P    S+P P+L
Sbjct: 941  KDETTKDYDYYKSGTIHVGTGLPPTSKSKPFPRL 974


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 400 IVHVAGVCRIFIITSSISVMVSPFFQYS 317
           IV++ G CR++IIT+++ V   P  ++S
Sbjct: 182 IVNLKGQCRVWIITTNMGVESVPTCRHS 209


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 586 WQIITFITPXISKSSPSRFTKAPSRPSLGW 497
           +QII  ++P IS+   + + K   +  L W
Sbjct: 50  YQIINILSPVISRHLSTHYAKLSKKTRLNW 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,558
Number of Sequences: 5004
Number of extensions: 32462
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)