Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24l21
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0293 - 8639826-8639852,8640161-8640361,8641165-8641611,864...    29   3.7  
01_01_0456 - 3385907-3386174,3386283-3386470,3386542-3387027,338...    28   6.5  
05_03_0289 - 11688733-11691342                                         27   8.7  

>02_02_0293 -
           8639826-8639852,8640161-8640361,8641165-8641611,
           8641726-8641816,8642949-8643949
          Length = 588

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 148 ARCCHNETRTTK*PTSPLQFLFRWRRKTVDKRC 246
           ARCC++E  +       L+F F+W R   D  C
Sbjct: 102 ARCCYSERTSVFDGYFILEFFFKWNRGEPDPLC 134


>01_01_0456 -
           3385907-3386174,3386283-3386470,3386542-3387027,
           3387123-3387184,3387269-3387429,3388215-3388290,
           3388382-3388471,3388591-3388659,3389498-3389756
          Length = 552

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +2

Query: 131 RNDRILHGVVTTKQERQSDRLRLYNFSSVGEERQWIRDVL 250
           RN+ I+  ++  K+E+Q+    + + +++ E+  W+ D L
Sbjct: 371 RNEYIVRSIICRKEEQQAITRSMLSSTAIDEKNLWVVDSL 410


>05_03_0289 - 11688733-11691342
          Length = 869

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 197 LYNFSSVGEERQWIR 241
           +YNFS VGEER W+R
Sbjct: 95  MYNFS-VGEERHWVR 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,740,000
Number of Sequences: 37544
Number of extensions: 201922
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)