Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24l18
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0415 - 21080600-21080941,21081119-21081217,21085363-210854... 33 0.17
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 33 0.23
11_01_0202 + 1606317-1606487,1606743-1606805,1607045-1607116,160... 32 0.39
07_03_1415 + 26410999-26411148,26411228-26411290,26412623-264126... 32 0.39
08_02_1048 + 23936193-23936376,23936731-23936915,23937332-239373... 31 0.69
03_02_0633 + 9978193-9978376,9978661-9978845,9979284-9979466,997... 31 0.69
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 31 1.2
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 30 1.6
12_01_0206 + 1555278-1555448,1555710-1555772,1556236-1556307,155... 30 2.1
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312... 29 2.8
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 29 3.7
12_01_0217 + 1647319-1648327,1648462-1648577,1648650-1648817,164... 29 4.8
12_01_0008 + 63393-64004 29 4.8
11_01_0216 + 1693889-1694897,1695034-1695149,1695222-1695389,169... 29 4.8
11_01_0009 + 67344-67955 29 4.8
03_06_0394 + 33592780-33593310,33593890-33594013,33594233-335943... 29 4.8
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 29 4.8
01_05_0490 + 22672241-22674679 29 4.8
02_05_0665 - 30720842-30721003,30721290-30721448,30721555-307216... 28 8.5
01_06_1074 + 34318685-34319314,34319429-34319546,34319662-343198... 28 8.5
>05_04_0415 -
21080600-21080941,21081119-21081217,21085363-21085455,
21085802-21085855,21085943-21086044,21086449-21086523,
21086662-21086784
Length = 295
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +3
Query: 477 NGRFGKISILSHKPTSKLYLQKTISAHNFNVDEIKVHQLMND----HPNFIKIYFNHGFI 644
+G FG ++ ++ T +L KTI N +++ +++N HPN I+
Sbjct: 12 SGNFGVTRLMCNRDTGELVAVKTIPRGNHRINKSAYREIINHRSLRHPNIIQFIEAILTH 71
Query: 645 NNQVIVMDYIDCPDLFETL 701
+ IVM+Y +LF+ +
Sbjct: 72 THLAIVMEYASGGELFDRI 90
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 33.1 bits (72), Expect = 0.23
Identities = 21/86 (24%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Frame = +3
Query: 480 GRFGKISILSHKPTSKLYLQKTISAHNF----NVDEIK--VHQL--MNDHPNFIKIYFNH 635
G+FG + +HKPT + Y K+I+A ++D+++ VH + + H N +++ +
Sbjct: 99 GQFGVTYLATHKPTGRRYACKSIAARKLARPDDLDDVRREVHIMHHLTGHRNIVELRGAY 158
Query: 636 GFINNQVIVMDYIDCPDLFETLQIKG 713
++ +VM+ + +LF+ + +G
Sbjct: 159 EDRHSVNLVMELCEGGELFDRIIARG 184
>11_01_0202 +
1606317-1606487,1606743-1606805,1607045-1607116,
1607244-1607351,1607497-1607538,1607965-1608018,
1608130-1608255,1608338-1608427,1608735-1608857,
1608963-1609070,1609412-1609573,1609655-1609711,
1609792-1609884
Length = 422
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 573 EIKVHQLMNDHPNFIKIYFNHGFINNQVIVMDYIDCPDLFETL 701
EI +L+ HPN ++IY G N IV++Y+ +LF+T+
Sbjct: 61 EISTMKLIK-HPNVVRIYEVMGSKTNIYIVLEYVTGGELFDTI 102
>07_03_1415 +
26410999-26411148,26411228-26411290,26412623-26412694,
26412798-26412905,26413023-26413103,26413176-26413229,
26413282-26413315,26413405-26413451,26413538-26413747,
26413861-26413962,26414240-26414356,26414460-26414531,
26414645-26414719,26414866-26414970
Length = 429
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Frame = +3
Query: 480 GRFGKISILSHKPTSKLYLQKTISAHNF---NVDEIKVHQLMN----DHPNFIKIYFNHG 638
G FGK+ + H T + K + +DE ++ HPN ++++
Sbjct: 15 GHFGKVKLARHADTGAAFAIKILDRQRILAMKIDEQIKREIATLKLLKHPNVVRLHEVSA 74
Query: 639 FINNQVIVMDYIDCPDLFETLQIKG 713
+V++Y++ +LF+ + +KG
Sbjct: 75 SKTKIYMVLEYVNGGELFDKIALKG 99
>08_02_1048 +
23936193-23936376,23936731-23936915,23937332-23937334,
23937354-23937536,23937627-23937758,23937889-23938074,
23938412-23938501,23938559-23938654,23938735-23938875,
23938955-23939185,23939564-23939677
Length = 514
Score = 31.5 bits (68), Expect = 0.69
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Frame = +3
Query: 438 ENCKNVKTRYKIINGRFGKISILSHKPTSKLYLQKTISAHNF-NVD-------EIKVHQL 593
E KN + G FGK+ I HK T K ++ N++ EIK+ +L
Sbjct: 12 EALKNYNLGRTLGIGSFGKVKIAEHKLTGHRVAIKILNRRQMRNMEMEEKAKREIKILRL 71
Query: 594 MNDHPNFIKIYFNHGFINNQVIVMDYIDCPDLFETLQIKG 713
HP+ I++Y + +VM+Y +LF+ + KG
Sbjct: 72 F-IHPHIIRLYEVIYTPTDIYVVMEYCKFGELFDYIVEKG 110
>03_02_0633 +
9978193-9978376,9978661-9978845,9979284-9979466,
9979564-9979695,9979826-9980011,9980381-9980470,
9980540-9980623,9980704-9980844,9980919-9981146,
9981511-9981624
Length = 508
Score = 31.5 bits (68), Expect = 0.69
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Frame = +3
Query: 438 ENCKNVKTRYKIINGRFGKISILSHKPTSKLYLQKTISAHNF-NVD-------EIKVHQL 593
E KN + G FGK+ I HK T K ++ N++ EIK+ +L
Sbjct: 12 EALKNYNLGRTLGIGSFGKVKIAEHKLTGHRVAIKILNRRQMRNMEMEEKAKREIKILRL 71
Query: 594 MNDHPNFIKIYFNHGFINNQVIVMDYIDCPDLFETLQIKG 713
HP+ I++Y + +VM+Y +LF+ + KG
Sbjct: 72 F-IHPHIIRLYEVIYTPTDIYVVMEYCKFGELFDYIVEKG 110
>01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -1
Query: 471 FYTEF*RFCSF---RKIVPAFAA*HLWRWWWP*RIVNMNLYNLIYSIIGTI 328
FYT + FC F RK +PA+ WRW++ V+ LY L+ S G +
Sbjct: 1329 FYTLWNLFCGFMIPRKRIPAW-----WRWYYWANPVSWTLYGLLTSQFGDL 1374
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/86 (20%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Frame = +3
Query: 480 GRFGKISILSHKPTSKLYLQKTIS----AHNFNVD----EIKVHQLMNDHPNFIKIYFNH 635
G+FG +++HK T K + K+I+ AH +++ E+++ + H N +++ +
Sbjct: 75 GQFGVTYLVTHKATGKRFACKSIATRKLAHRDDIEDVRREVQIMHHLTGHRNIVELRGAY 134
Query: 636 GFINNQVIVMDYIDCPDLFETLQIKG 713
++ ++M+ + +LF+ + +G
Sbjct: 135 EDRHSVNLIMELCEGGELFDRIIARG 160
>12_01_0206 +
1555278-1555448,1555710-1555772,1556236-1556307,
1556430-1556537,1556644-1556724,1556861-1556914,
1557020-1557145,1557228-1557317,1557603-1557725,
1557831-1557938,1558287-1558400,1558530-1558586,
1558667-1558741,1558915-1558989
Length = 438
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 573 EIKVHQLMNDHPNFIKIYFNHGFINNQVIVMDYIDCPDLFETL 701
EI +L+ HPN ++IY G IV++Y+ +LF+T+
Sbjct: 61 EISTMKLIK-HPNVVRIYEVMGSKTKIYIVLEYVTGGELFDTI 102
>05_05_0315 -
24030695-24030787,24030896-24030995,24031120-24031247,
24031350-24031517,24031626-24031741,24031773-24031896,
24032085-24032254,24032255-24032999
Length = 547
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 438 ENCKNVKTRYKIIN-GRFGKISILSHKPTSKLYLQKTISAHNFNVDE 575
E+ K++ T K + G+FG S+ +HK T + + KTIS + E
Sbjct: 62 EDVKSIYTVGKELGRGQFGVTSLCTHKATGQRFACKTISKRKLSTKE 108
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = -3
Query: 178 YMYVDDSEVSRYYNAVVKMKRLVINVRDPSLRQSLYNTIAYIERLLNIGTVNDSEITML 2
Y+Y+ +SEVS+ Y ++ R VI V S+ SLY +IA R +++ +S T++
Sbjct: 1012 YLYILESEVSQDYQSMA--SRQVIEVPSTSVGGSLY-SIAVCSRGVDMQKALESTSTLI 1067
>12_01_0217 +
1647319-1648327,1648462-1648577,1648650-1648817,
1648911-1649038,1649121-1649220,1649329-1649433
Length = 541
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Frame = +3
Query: 447 KNVKTRYKIIN----GRFGKISILSHKPTSKLYLQKTIS----AHNFNVD----EIKVHQ 590
+ V+T Y I G+FG + +HK T + KTI+ A+ +VD E+++
Sbjct: 77 EEVRTTYSIGKELGRGQFGVTHLCTHKATGEKLACKTIAKRKLANKEDVDDVRREVQIMH 136
Query: 591 LMNDHPNFIKIYFNHGFINNQVIVMDYIDCPDLFETLQIKG 713
++ PN + + + +N +VM+ +LF+ + +G
Sbjct: 137 HLSGQPNIVDLRGAYEDKHNVHLVMELCAGGELFDRIIARG 177
>12_01_0008 + 63393-64004
Length = 203
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 383 HGHHHRHKCYAANAGTILRKLQKRQ 457
H HHH H YAA A LQ++Q
Sbjct: 110 HHHHHHHHPYAAAAAAQSHHLQQQQ 134
>11_01_0216 +
1693889-1694897,1695034-1695149,1695222-1695389,
1695482-1695609,1695692-1695791,1696124-1696168
Length = 521
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Frame = +3
Query: 447 KNVKTRYKIIN----GRFGKISILSHKPTSKLYLQKTIS----AHNFNVD----EIKVHQ 590
+ V+T Y I G+FG + +HK T + KTI+ A+ +VD E+++
Sbjct: 77 EEVRTTYSIGKELGRGQFGVTHLCTHKATGEKLACKTIAKRKLANKEDVDDVRREVQIMH 136
Query: 591 LMNDHPNFIKIYFNHGFINNQVIVMDYIDCPDLFETLQIKG 713
++ PN + + + +N +VM+ +LF+ + +G
Sbjct: 137 HLSGQPNIVDLRGAYEDKHNVHLVMELCAGGELFDRIIARG 177
>11_01_0009 + 67344-67955
Length = 203
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 383 HGHHHRHKCYAANAGTILRKLQKRQ 457
H HHH H YAA A LQ++Q
Sbjct: 110 HHHHHHHHPYAAAAAAQSHHLQQQQ 134
>03_06_0394 +
33592780-33593310,33593890-33594013,33594233-33594376,
33594463-33594615,33594973-33595088,33595253-33595420,
33595514-33595744,33596229-33596378
Length = 538
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Frame = +3
Query: 480 GRFGKISILSHKPTSKLYLQKTISAHNFN--VD------EIKVHQLMNDHPNFIKIYFNH 635
G FG + + T Y K+IS VD E+++ + M HPN + + +
Sbjct: 73 GEFGITYLCTEAETGDRYACKSISKRKLRTPVDVEDVRREVEIMRHMPSHPNIVSLRAAY 132
Query: 636 GFINNQVIVMDYIDCPDLFETLQIKG 713
+N +VM+ + +LF+ + +G
Sbjct: 133 EDEDNVHLVMELCEGGELFDRIVARG 158
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 355 IVQIHIYDSSWPPPPPQML 411
+VQ I SSWPPPPP L
Sbjct: 401 LVQQPIAMSSWPPPPPVQL 419
>01_05_0490 + 22672241-22674679
Length = 812
Score = 28.7 bits (61), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 370 IYDSSWPPPPPQMLRCKRW 426
+ +++ PPPPP + R +RW
Sbjct: 332 VEETTMPPPPPPLTRSRRW 350
>02_05_0665 -
30720842-30721003,30721290-30721448,30721555-30721687,
30722042-30722227,30722377-30722906
Length = 389
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 586 WTFISSTLKLCAEIVFCKYNLLVG 515
WT I+ L++ A CKYN+L G
Sbjct: 362 WTCITKWLRMHATCPLCKYNILKG 385
>01_06_1074 +
34318685-34319314,34319429-34319546,34319662-34319814,
34319906-34320021,34320135-34320302,34320424-34320551,
34320645-34320744,34320866-34320958
Length = 501
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Frame = +3
Query: 438 ENCKNVKTRYKIIN-GRFGKISILSHKPTSKLYLQKTISAHNFNVD--------EIKVHQ 590
E+ +++ T K + G+FG S+ +HK T + + KTI+ + E+++
Sbjct: 55 EDVRSIYTIGKELGRGQFGVTSLCTHKATGQKFACKTIAKRKLSTKEDVEDVRREVQIMY 114
Query: 591 LMNDHPNFIKIYFNHGFINNQVIVMDYIDCPDLFETLQIKG 713
+ PN +++ + + +VM+ +LF+ + KG
Sbjct: 115 HLAGQPNVVELKGAYEDKQSVHLVMELCAGGELFDRIIAKG 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,088,819
Number of Sequences: 37544
Number of extensions: 336826
Number of successful extensions: 1279
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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