Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24l17
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical ...    30   1.3  
U80453-8|AAK31442.1|  317|Caenorhabditis elegans Egg laying defe...    28   5.4  
U00031-6|AAP68961.1|  627|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical
           protein F17A9.2 protein.
          Length = 533

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 414 SNVNASYTQIAAIKQNAYESEPRGPLTKPNALV 512
           SNV+A    + AI    Y + P+GPLT+ + +V
Sbjct: 327 SNVDAEKHLVVAIGNKCYAAMPKGPLTEDHVMV 359


>U80453-8|AAK31442.1|  317|Caenorhabditis elegans Egg laying
           defective protein 26 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 257 TGEPFTGDSTSCESALVCTIVLPISSTHLSNKKKPYRSET 376
           TG PF+ D TS    L CT++ P +ST ++   +P R  +
Sbjct: 270 TGVPFSYDMTSNFKYLACTVLKP-TSTVVNAMTRPNRDRS 308


>U00031-6|AAP68961.1|  627|Caenorhabditis elegans Hypothetical
           protein B0361.3 protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 617 FARMVKISEFYRLVFKIF*KAINNLDKN 534
           F  +  +++FYRL    F +++NNL+KN
Sbjct: 189 FTTLNSVNDFYRLYQHHFDQSLNNLNKN 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,303,607
Number of Sequences: 27780
Number of extensions: 322064
Number of successful extensions: 577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)