Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24l14
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.8  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   7.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.6  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   9.6  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   9.6  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   9.6  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   9.6  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   9.6  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 27  KNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSD 131
           K  ++    Q+  +T+  +Y  DN   ++I  N+D
Sbjct: 184 KGELVSLTVQAMDSTNTMVYMVDNKNTLIIYQNAD 218


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 260 IFIVFNQFVRWRR 222
           IF+ FN  VR+RR
Sbjct: 23  IFLYFNSLVRFRR 35


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 324 PKEYYVLKSIISDLLMGAQGKVFD 395
           P  YY+    +SDLL    G  F+
Sbjct: 67  PTNYYLFNLAVSDLLFLILGLPFE 90


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 522 IQDLQSEYNKKITFTTDTILENLK 593
           I D++ EY+ ++TF    + E L+
Sbjct: 73  ISDIKMEYSVQLTFREQWLDERLR 96


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 27  KNGIMKTDAQSTSNTHNFMYSPDNNLEVV 113
           +NGI   D  +  N + F+   +NN  +V
Sbjct: 318 RNGIACWDTNTELNPNTFILVAENNTTMV 346


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 452 HFNFERSCGRQLARARH*QVARYD 523
           H++ ERSC R   R    +  RY+
Sbjct: 230 HYSRERSCSRDRNREYRKKDRRYE 253


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 452 HFNFERSCGRQLARARH*QVARYD 523
           H++ ERSC R   R    +  RY+
Sbjct: 230 HYSRERSCSRDRNREYRKKDRRYE 253


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 452 HFNFERSCGRQLARARH*QVARYD 523
           H++ ERSC R   R    +  RY+
Sbjct: 230 HYSRERSCSRDRNREYRKKDRRYE 253


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 452 HFNFERSCGRQLARARH*QVARYD 523
           H++ ERSC R   R    +  RY+
Sbjct: 230 HYSRERSCSRDRNREYRKKDRRYE 253


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 452 HFNFERSCGRQLARARH*QVARYD 523
           H++ ERSC R   R    +  RY+
Sbjct: 219 HYSRERSCSRDRNREYRKKDRRYE 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,668
Number of Sequences: 438
Number of extensions: 3865
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)