Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24l08
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 35 0.071
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242 34 0.094
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 34 0.12
05_01_0018 + 125697-126130,126231-126356,126726-126825,126950-12... 31 0.87
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589... 31 1.2
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 30 1.5
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 29 3.5
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838... 29 4.7
11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294... 28 6.2
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590... 28 8.1
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 34.7 bits (76), Expect = 0.071
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 3 DKIYKLVETVDSSNKLSRRQVDFL-IHALLNNVSVTFTLHRFVDDNVLTQDELSFLANFL 179
DK +VE++DSS ++ + Q D L + LL N L VDD T+DE+ L L
Sbjct: 1408 DKSRDIVESIDSSERVLKYQDDILQLKVLLTN------LEEQVDDLRSTKDEVEILNMVL 1461
Query: 180 VTKLDE 197
+KL+E
Sbjct: 1462 KSKLEE 1467
>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
Length = 417
Score = 34.3 bits (75), Expect = 0.094
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Frame = +2
Query: 254 CNIQFQSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSI 433
C+++F + +LQ +T++++ S+ + +D +P+E + + + D +
Sbjct: 223 CSVEFSCFLG--HLQCSTLVTVTSSSL-SDGMPEE-----CFFSVPELQDSVDGDAGVGV 274
Query: 434 DLPLTTPEQKDDFMNAIKPFETLN-IESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYP 610
D+ +T E A+ F ++ +E D + D A +GDD+ N +EDE
Sbjct: 275 DIRITIDE-------AVPLFSCVDGMEDDDDEDCDDDVDANNGDDDENDGDTSDDEDEDD 327
Query: 611 VDGLKL 628
DG KL
Sbjct: 328 EDGTKL 333
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = +2
Query: 386 LNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDD 565
++ + +E DDD+ +++ TPE + + ++ L +E DI++++ D P GD
Sbjct: 289 MDDIDDEYDDDDDDDLNMRDATPEPDELDQDIVE--SDLELEGDIVESDHQDPPQKMGDP 346
Query: 566 NNNRKVVDANED 601
+ + V + N D
Sbjct: 347 SID--VTEENRD 356
>05_01_0018 +
125697-126130,126231-126356,126726-126825,126950-126969,
127118-127220,127331-127469,127577-127791,127873-128523
Length = 595
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +2
Query: 377 TLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQ--TDAPA 550
TLR + ++C D L P+ + M+ I+ + +E KT ++
Sbjct: 354 TLRAQKIVKKCPSCPTDICDF-LENPQINREMMDLIESLQRKAVEEGDTKTSSDVSNGAE 412
Query: 551 TSGDDNNNRKVVDANEDEYPVDGLKLK 631
+SGDD NN + +D D LK
Sbjct: 413 SSGDDGNNEALEKGEDDSSLKDDGSLK 439
>01_01_0762 +
5889925-5890136,5891110-5891273,5891755-5891878,
5891941-5892073,5892629-5892732,5892867-5895780,
5895876-5895965,5896251-5896355,5896633-5896740,
5896826-5896876
Length = 1334
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +2
Query: 374 VTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPAT 553
+TL S+P+ D+ + D P+ +PE+ + ++ P T+ I+ I ++ T+A
Sbjct: 565 ITLPNQSLPDSKEIPDSKAEDAPIDSPEKLEPGPSSYTP--TIPIKESSIVSQNTNAENV 622
Query: 554 SGD 562
SGD
Sbjct: 623 SGD 625
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 452 PEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKV-VDANEDEYPVDGLKL 628
PE+K DF+ A + ++ +I + E ++ G+D +KV +D ED + KL
Sbjct: 1331 PEEKVDFIGASESLDSSSIADHELPDESSEKEVNMGEDEGKKKVELDDWEDAAEMSTPKL 1390
Query: 629 K 631
+
Sbjct: 1391 E 1391
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 458 QKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYPVDGLKLKS 634
Q+DD N + T N++ D + T P TS +NR ED G+ ++S
Sbjct: 194 QQDDLANLVDERNTENLQKDAMATSDFQQPCTS----DNRCFDQRQEDSINTVGVNIRS 248
>01_01_1062 +
8381281-8381490,8382353-8382449,8382546-8382637,
8382729-8382860,8382975-8383160,8383244-8383407,
8383514-8383592,8384484-8384612,8385102-8385229,
8385348-8385711
Length = 526
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 515 DIIKTEQTDAPATSGDDNNNRKVVDANEDEYPVDGLKLKSKYVAYYKCLKIL 670
+I+K +TD +GD N +++D E ++ L+ Y K +KIL
Sbjct: 438 NILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKIL 489
>11_01_0389 -
2937242-2939476,2939556-2939666,2941254-2941450,
2941543-2941633
Length = 877
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +2
Query: 458 QKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYPVDGLKLKS 634
Q+DD N + T N++ D + T P TS NR ED G+ ++S
Sbjct: 181 QQDDLANLVNESNTGNLQKDAMATPDFHQPCTS----ENRCFDQPQEDSINAVGVNIRS 235
>04_04_0827 -
28457858-28458028,28458513-28458669,28458984-28459083,
28459204-28459231,28459321-28459396,28461276-28461355,
28461642-28461805,28461897-28462056,28462154-28462277,
28462901-28463941,28464141-28464259,28464512-28464823,
28465222-28465425,28466068-28466751,28467301-28467474
Length = 1197
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 371 NVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDII 523
+VT +L S E C+ D + P+ ++KDD P + +IE D++
Sbjct: 566 SVTTKLLSY-ETCSVSDGINPASPINENKKKDDLSYGHVPMHSQSIEHDVV 615
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,485,804
Number of Sequences: 37544
Number of extensions: 301021
Number of successful extensions: 932
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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