Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24l08
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical pr...    31   0.60 
Z81483-3|CAB03961.1|  152|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U40029-12|AAA81131.1|  785|Caenorhabditis elegans Temporarily as...    28   5.5  
Z82051-4|CAB04818.2|  339|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U50067-5|AAY86219.1|  306|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    28   7.3  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    28   7.3  
AC084197-23|AAM44389.1|  610|Caenorhabditis elegans Hypothetical...    28   7.3  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U23520-6|AAC46553.1|  287|Caenorhabditis elegans Collagen protei...    27   9.7  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      27   9.7  

>Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical
           protein K05C4.5 protein.
          Length = 656

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
 Frame = +2

Query: 281 NLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQ 460
           ++L++++ T++S     +KA+    EN+   + +    + EE   + +    +  +   +
Sbjct: 558 SILDVESGTVVSAQDGPLKANKKQRENEDTRLLVNGMRLREEVEQNGD---GMSPSKRTR 614

Query: 461 KDDFMNAIKPFETLNIESDIIKTEQT--DAPATSG 559
           ++ F N I PF+++N  S I++ E T  + P T+G
Sbjct: 615 RNSFKNEIPPFQSMN--SRIVQLEVTGDEIPKTAG 647


>Z81483-3|CAB03961.1|  152|Caenorhabditis elegans Hypothetical
           protein C43D7.5 protein.
          Length = 152

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +2

Query: 371 NVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPA 550
           NV  ++++  + C + + +S      T ++KD+F N     +T+N   +    E+ D   
Sbjct: 7   NVDTKVDNRKDNCDNTNTYS-----HTVDRKDNFDNTTTNTKTVNRNDNCNNQEEGDVNM 61

Query: 551 TSGDDN-NNRKVVDANEDEYPV 613
              +DN NNR+  ++    Y +
Sbjct: 62  YRRNDNCNNREATNSRSANYSI 83


>U40029-12|AAA81131.1|  785|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 151 protein.
          Length = 785

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 560 DDNNNRKVVDANEDEYPVDGLK 625
           DD++N +V D +E+E P+D LK
Sbjct: 392 DDSDNEEVEDDSEEEEPMDDLK 413


>Z82051-4|CAB04818.2|  339|Caenorhabditis elegans Hypothetical
           protein T23D5.7 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 285 KLIKD*NCILHKFIFIFIYLTINTPAIGMLRPVL 184
           K++ D    LHK IF  + L I TP I +  P++
Sbjct: 236 KMVSDQERKLHKQIFKTLMLQITTPTIVLFSPII 269


>U50067-5|AAY86219.1|  306|Caenorhabditis elegans Hypothetical
           protein C18F3.4 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +2

Query: 335 KADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETL-NIE 511
           + +L  D ND +  T   NSV E   DD++ S +  L+ P ++ +      P  +L  I 
Sbjct: 54  QCNLRDDPNDDQPTTSS-NSVKESINDDESNSENNKLSPPRRQSN------PHSSLPAIS 106

Query: 512 SDIIKTEQTDAPATSGDDNN 571
           S  +K E TD+   S   N+
Sbjct: 107 SSTVKNEPTDSWTPSALSND 126


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 323 SNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIK 487
           + K K D   DE  P+N    + +   E  +DDN S D      E+++ F+  +K
Sbjct: 312 AGKSKFDSSSDEESPENEKFPVGNGKSEYQEDDNDSED---DLEERREQFIRCVK 363


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 449 TPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEY 607
           TPE+    M+   P +T  I   II TE  D+P+        RK  D   +E+
Sbjct: 326 TPERYTQHMSPNLPLQTATIAPLIIPTENYDSPSYR-QPAIKRKATDLTNEEH 377


>AC084197-23|AAM44389.1|  610|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.33 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 350 PDENDPKNVTLRLNSVPEECTDDD 421
           PD N   N  +RL  VP  C +DD
Sbjct: 149 PDSNGEVNHVIRLRGVPWSCKEDD 172


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
            K04G2.8b protein.
          Length = 1188

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +2

Query: 365  PKNVTLRLNSVPEEC-----TDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIE 511
            PK   L+    PEE      T DD   ++ P+   EQ+  +MNA+K  +  NIE
Sbjct: 1084 PKPTLLKDKHYPEEDSIENQTRDDTIYVNAPVVEAEQERIYMNALK--QQKNIE 1135


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
            K04G2.8a protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +2

Query: 365  PKNVTLRLNSVPEEC-----TDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIE 511
            PK   L+    PEE      T DD   ++ P+   EQ+  +MNA+K  +  NIE
Sbjct: 1082 PKPTLLKDKHYPEEDSIENQTRDDTIYVNAPVVEAEQERIYMNALK--QQKNIE 1133


>U23520-6|AAC46553.1|  287|Caenorhabditis elegans Collagen protein
           175 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -2

Query: 582 TFRLLLS---SPLVAGASVCSVLIISDSIFKVSKGL 484
           TF L +S   S +V  AS+CSVL+I + I K+S+ +
Sbjct: 2   TFALTVSCATSAVVITASLCSVLVIMNDINKLSEDI 37


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +2

Query: 365  PKNVTLRLNSVPEEC-----TDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIE 511
            PK   L+    PEE      T DD   ++ P+   EQ+  +MNA+K  +  NIE
Sbjct: 1082 PKPTLLKDKHYPEEDSIENQTRDDTIYVNAPVVEAEQERIYMNALK--QQKNIE 1133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,380,063
Number of Sequences: 27780
Number of extensions: 299303
Number of successful extensions: 981
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)