Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24l07
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   1.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.0  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    27   3.5  
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    26   6.1  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    26   6.1  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   8.0  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.0  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/45 (22%), Positives = 28/45 (62%)
 Frame = +3

Query: 159 AFDINTFDITNDDSIVAFQQNNIQELENFEQWFKNNLSYSFSQKA 293
           +F+ +  D+T++++I +  +     +E  + + +NN++ S SQ++
Sbjct: 26  SFEADDIDVTDENTIFSTSRKEQSTIEPMDSFVENNIANSSSQQS 70


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +3

Query: 162  FDINTFDITNDDSIVAFQQNNIQELENFEQWFKNNLSYSFSQKAEKVVNPNRNW--NDNT 335
            +DI       D   + F+  N QEL  F  + K+++ Y    K       +  W     T
Sbjct: 1595 YDILLDSFIEDCIRMFFENGNHQELRKFLNFPKDSIIYDSDFKTLVSEEGSFQWVKLQPT 1654

Query: 336  VFDNLSPWT 362
             FD+LS WT
Sbjct: 1655 NFDSLSNWT 1663


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 162 FDINTFDITNDDSIVAFQQNNIQELENFEQWFKNNLSYS 278
           FD N + +  +D  V    NN  +L    Q + N  +YS
Sbjct: 277 FDPNVYALNTNDGPVTSTDNNCDQLNTRMQAWNNGFNYS 315


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 255 FKNNLSYSFSQKAEKVVNPNRNWNDNTVFDNLS 353
           F N L+Y+   +      PN +W D   FDN++
Sbjct: 131 FSNPLNYNHQARRHAESTPNASWTDQ--FDNVA 161


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 561 FTITMPEVFMNITI-VLNETQHYDEAAALTRYWLGLYLPTAVNS 689
           F  T+P    N TI  + + +H+D++  + +YWL  Y     NS
Sbjct: 464 FEETLP--LQNDTINKVEKVKHFDDSIRVLKYWLSCYERILPNS 505


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +3

Query: 336  VFDNLSPWTSVPDFGTVCHTLIGYCVRYNNTSDALYQNPELAYNLINGLRIICSKLPDPP 515
            VFD+ S +      G     LI Y   YN  +     NP  + + I G+R  C +     
Sbjct: 1226 VFDSESDYEQFKKEGL---DLIYYVNNYNERTSRYPFNPNGSRDAIAGVRSPCGRFLAMM 1282

Query: 516  PHQQAPWGPVADWYH 560
            PH +     VA+ Y+
Sbjct: 1283 PHPERVVLKVANSYY 1297


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 291 AEKVVNPNRNWNDNTVFDNLSPWTSVP 371
           A+K+++ +  WN +  F + S W ++P
Sbjct: 40  AQKILDYSAEWNSHEYFPSPSNWRALP 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,751
Number of Sequences: 5004
Number of extensions: 49018
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)