Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24k18
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0830 + 25159758-25162460 30 1.3
09_02_0060 + 3729613-3729863,3730377-3730392 28 3.8
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805... 28 3.8
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 28 3.8
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 28 5.1
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 28 5.1
06_03_0948 - 26252230-26252460,26252567-26252614,26252703-262530... 27 6.7
04_03_0457 + 16113087-16113249,16113468-16113498,16114138-161142... 27 8.8
>06_03_0830 + 25159758-25162460
Length = 900
Score = 29.9 bits (64), Expect = 1.3
Identities = 29/103 (28%), Positives = 42/103 (40%)
Frame = +2
Query: 122 WTNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAE 301
W + ++ ASP E S ++R L + V+ A LS +
Sbjct: 554 WKGSAATSAFRPASPRCTPDGEKSVSASSQRTGNALFDLNVSESDNATAGEPLSAAIL-- 611
Query: 302 KPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNV 430
PLS D + K+ S VG NS+ L + AA T+SNV
Sbjct: 612 -PLSSDIVRKDASATVGLNSLELD--LNCPCDDEEAAITTSNV 651
>09_02_0060 + 3729613-3729863,3730377-3730392
Length = 88
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 254 ANWPPGRY*ALRLIVCSRLIPPIRC 180
A WPP RY + R C R +P + C
Sbjct: 35 AKWPPSRYRSYR-ATCCRAVPSLLC 58
>04_04_1401 +
33279092-33279286,33280223-33280306,33280459-33280524,
33280945-33281028,33281181-33281246,33281719-33281802,
33281955-33282020,33282323-33282388,33282667-33282726,
33282805-33282888,33282968-33283111,33283552-33283586,
33283694-33283746,33283828-33283928,33284516-33284974
Length = 548
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 197 SDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGT 376
SD+NK + KL + ++ R GDNK +K +D + +N + L
Sbjct: 202 SDDNKSDSCKLRDKTTSDDRSKSGDNKYDSCKTRDKKPIVDLADEFENNTIKKKITLLSE 261
Query: 377 VYDY 388
YD+
Sbjct: 262 KYDF 265
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 28.3 bits (60), Expect = 3.8
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 209 CSRLIPPIRC-SALNWATPRLR 147
CS +PP+RC L W+ PR++
Sbjct: 23 CSSRLPPLRCFVGLRWSAPRIQ 44
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +2
Query: 125 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 304
T N+ L + SP+ S+ +E D KR+ L I +G + + +E+
Sbjct: 154 TGLHNIVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEIRLVILNGGSMIYYSNPSEQ 213
Query: 305 PLSID 319
P S+D
Sbjct: 214 PFSVD 218
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +2
Query: 134 LNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 313
++ + L + LG E + DE RL + + A+ + GDN M+ ++ +
Sbjct: 450 ISKDELVQCWTGLGLLPELADVDEAHRLAHSVISVLEASRLVERGDNHRYNMFPSDTHVR 509
Query: 314 IDDIVKEGS 340
+ D+V++ +
Sbjct: 510 LHDVVRDAA 518
>06_03_0948 -
26252230-26252460,26252567-26252614,26252703-26253041,
26253132-26253260,26255404-26255967
Length = 436
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 269 DNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSS 424
D +++MY++EK L + + +G NS+ GT + V SP ++ T S
Sbjct: 243 DGDMAEMYLSEKKLRTEASFYGDQSMLGYNSVGDGTSFSAPV-SPVSSPTES 293
>04_03_0457 +
16113087-16113249,16113468-16113498,16114138-16114271,
16114370-16114518,16114974-16115039,16115159-16115206,
16115293-16115496,16115614-16115637
Length = 272
Score = 27.1 bits (57), Expect = 8.8
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +2
Query: 134 LNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 313
+N ++ +AS + G+ +E ESD++ ++NV+ N + G KL ++ K L
Sbjct: 81 VNEDTDDDASMNAGEGNE--ESDDDVKINVRDENGTIE----TRGKTKLKDIWNLPKGLR 134
Query: 314 I----DDIVKEGSNKVGTNSIFLG 373
I +D+ + ++ G S FLG
Sbjct: 135 IVVQCNDLNQAVGDEAGILSKFLG 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,986
Number of Sequences: 37544
Number of extensions: 240422
Number of successful extensions: 610
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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