Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24k17
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   2.8  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   2.8  
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch...    25   8.4  
SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc...    25   8.4  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   8.4  

>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 398 SDPQPLAQQSGALTTVPLNQSPN 330
           S P P    +GA    PLNQ P+
Sbjct: 195 SSPNPAEHMTGAYVNTPLNQPPS 217


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 28  HLVVVCTMRSMPPMIEHSGRTSHVGSLLGLLHTSRYRLSGFTLNPHTWLESR 183
           H + +C    +  + +H+G  +H G      ++SR+  S F+   H    SR
Sbjct: 18  HGLSICAFNHLHHVPQHNGSLAHEGPTNQTDYSSRHHESQFSQEAHAEQRSR 69


>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 207

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 140 SLYLEV*SSPSREPTCDVLPL 78
           S+YLE  S P RE  C + P+
Sbjct: 79  SMYLEGNSEPKREDKCGIRPV 99


>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
 Frame = +1

Query: 76  HSGRTSHVGSLLGLLHTSR------YRLSGF 150
           HSG T H G  L + H SR      Y L+GF
Sbjct: 74  HSGYTGHFGEKLDMEHQSRGDLKESYDLAGF 104


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 97  HVTFFHCVRSWV 62
           H+  FHC+R+W+
Sbjct: 330 HILHFHCLRNWL 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,064
Number of Sequences: 5004
Number of extensions: 37354
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)