Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24k17
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1149 - 26467252-26468319,26468452-26469147,26469263-264694...    27   8.5  
07_01_0927 - 7784564-7784656,7785182-7785225,7785946-7785970,778...    27   8.5  

>12_02_1149 -
           26467252-26468319,26468452-26469147,26469263-26469409,
           26470936-26471274
          Length = 749

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 85  RTSHVGSLLGLLHTSRYRLSGFTLNPHTWLESRARVKL*FSSNHSLNSVSF 237
           + S +GSL  ++H++R RL         W E   RV+   +++H  +  +F
Sbjct: 51  KASPLGSLRRVMHSNRTRLESAAEAAVAWEEEFERVETFTATSHRKSGAAF 101


>07_01_0927 -
           7784564-7784656,7785182-7785225,7785946-7785970,
           7786357-7786497,7786590-7786619,7786686-7786762,
           7786816-7786855,7787055-7787122,7787782-7789864
          Length = 866

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 43  CTMRSMPPMIEHSGRTSHVGSLLGLLHTSRYRLSGFTLNP 162
           CT+ +M  +  H GR +++ +++GLL  +  R++   L P
Sbjct: 778 CTIMAMKKLPWHHGRVNNIINVVGLLFVNDARMATRVLFP 817


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,019,229
Number of Sequences: 37544
Number of extensions: 248454
Number of successful extensions: 629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)