Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24k17
         (501 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094871-1|AAM11224.1|  256|Drosophila melanogaster RE37682p pro...    29   2.7  
AE014297-2431|AAF55487.1|  256|Drosophila melanogaster CG7785-PA...    29   2.7  
AF231134-1|AAF36977.1|  472|Drosophila melanogaster cyclin-depen...    28   6.2  
AF154416-1|AAD38395.1|  474|Drosophila melanogaster Cdk5 activat...    28   6.2  
AE014134-1830|AAF52906.1|  472|Drosophila melanogaster CG5387-PA...    28   6.2  
AY060604-1|AAL28152.1|  319|Drosophila melanogaster GH02377p pro...    28   8.2  

>AY094871-1|AAM11224.1|  256|Drosophila melanogaster RE37682p
           protein.
          Length = 256

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 368 GALTTVPLNQSPNKFSVYIQNGLAWLI 288
           G L T PL QS + F V IQ+G +W +
Sbjct: 53  GVLATAPLVQSKSYFEVKIQHGGSWSV 79


>AE014297-2431|AAF55487.1|  256|Drosophila melanogaster CG7785-PA
           protein.
          Length = 256

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 368 GALTTVPLNQSPNKFSVYIQNGLAWLI 288
           G L T PL QS + F V IQ+G +W +
Sbjct: 53  GVLATAPLVQSKSYFEVKIQHGGSWSV 79


>AF231134-1|AAF36977.1|  472|Drosophila melanogaster
           cyclin-dependent kinase 5 regulatorysubunit protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 329 KFSVYIQNGLAWLICEAWHRQVQSQNKDRAAKLTE--FKE*LLENYSFTRALDSSQ 168
           K S++I N L+W      H + + +NK++ A L    FK  LLE+ SF  + D ++
Sbjct: 135 KHSIFI-NALSWKKLSTSHNKKKIENKNKCANLPTACFKAQLLES-SFASSSDKNR 188


>AF154416-1|AAD38395.1|  474|Drosophila melanogaster Cdk5
           activator-like protein protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 329 KFSVYIQNGLAWLICEAWHRQVQSQNKDRAAKLTE--FKE*LLENYSFTRALDSSQ 168
           K S++I N L+W      H + + +NK++ A L    FK  LLE+ SF  + D ++
Sbjct: 135 KHSIFI-NALSWKKLSTSHNKKKIENKNKCANLPTACFKAQLLES-SFASSSDKNR 188


>AE014134-1830|AAF52906.1|  472|Drosophila melanogaster CG5387-PA
           protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 329 KFSVYIQNGLAWLICEAWHRQVQSQNKDRAAKLTE--FKE*LLENYSFTRALDSSQ 168
           K S++I N L+W      H + + +NK++ A L    FK  LLE+ SF  + D ++
Sbjct: 135 KHSIFI-NALSWKKLSTSHNKKKIENKNKCANLPTACFKAQLLES-SFASSSDKNR 188


>AY060604-1|AAL28152.1|  319|Drosophila melanogaster GH02377p
           protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 400 NRIHNPWHNSQERLPLYH*ISH 335
           +R+H P H    RLP++H + H
Sbjct: 217 DRLHWPLHRGDRRLPVHHAVGH 238


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,395,617
Number of Sequences: 53049
Number of extensions: 412770
Number of successful extensions: 952
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1784022528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)