Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24k17
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.5  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   5.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.5  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 290 ICEAWHRQVQSQNKDRAAK 234
           +CE  ++Q++   +DRAA+
Sbjct: 327 LCEYLYKQLELHTEDRAAE 345


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 390 TTLGTTVRSAYH 355
           T LGTTVR++ H
Sbjct: 272 TNLGTTVRASVH 283


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 217 SDYWKTIVSRVLSTPA 170
           SDYWK+    +++ PA
Sbjct: 193 SDYWKSGTWDIINVPA 208


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -3

Query: 136 YTSRYEVVLVGNRHVTFFHCVRSWV 62
           Y  +  ++L    H+T +  V  WV
Sbjct: 173 YWDQEPIILADELHLTEYKLVEKWV 197


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 16  DDEKHLVVVCTMRSMPPMIEHSGRT 90
           D   + + VC M ++ P+  H+G +
Sbjct: 50  DAYDNCITVCNMENVDPLGIHTGES 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,294
Number of Sequences: 438
Number of extensions: 2509
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)