Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24k12
(272 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0532 + 19171290-19171394,19173122-19173302,19173761-191742... 27 2.0
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 27 2.7
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 27 2.7
11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370 26 4.7
10_08_0633 + 19446075-19446488,19446607-19446975,19447961-194480... 26 4.7
04_01_0106 + 1102880-1105691,1105781-1105806 26 4.7
12_01_0800 - 7331444-7331539,7331617-7331742,7331830-7331907,733... 25 6.3
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 25 6.3
05_05_0148 - 22729469-22730116,22730215-22730589 25 6.3
11_01_0755 - 6343084-6345172,6345526-6346367 25 8.3
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 25 8.3
05_01_0586 - 5262878-5263054,5263267-5263328,5264350-5264539,526... 25 8.3
01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976 25 8.3
>07_03_0532 +
19171290-19171394,19173122-19173302,19173761-19174245,
19174877-19176283,19176413-19176628
Length = 797
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 48 DIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRL 176
DI MD F ++ ++ S K++ ++ S + + EK+KRL
Sbjct: 314 DIGMMDDFLEMEKIASANSPSKSEAEDAASVQLVKLEEKIKRL 356
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 123 DENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNY 257
D N ++N S + + E D D V +DNR+ N + R Y
Sbjct: 195 DNNDNNNSNSSNNGMYFGEVDEYFDLVGYNSYYDNRIENNQDRQY 239
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 72 EQLINVSLLKSLIKTQIDENV-SDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKI 248
EQ N + LI + E++ SD ++ + K RL +L + + I +R+N K
Sbjct: 768 EQSRNSKIENELIWHAVLESIQSDTLRKIMAKEGRLSSVSLGTAPTVQLIFSSRVNKSKA 827
Query: 249 RNY 257
NY
Sbjct: 828 ENY 830
>11_04_0311 + 16232961-16233079,16235135-16237080,16237246-16237370
Length = 729
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -1
Query: 164 FFAHRLDIVRHVFVDLRFDQRLEQRHVNQLFKLIHINYIN 45
F + +L IV+ +DL + +++HV +FK++ + Y+N
Sbjct: 341 FMSLKLGIVQ--VLDLEGCKGFKKQHVKDIFKMLLLKYLN 378
>10_08_0633 +
19446075-19446488,19446607-19446975,19447961-19448054,
19448137-19448174,19448770-19448916,19449580-19449679,
19449786-19450744,19451143-19451295
Length = 757
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 150 SMSEKLKRLECDNLTDSVEIYGIHDNRLNNKK 245
S S+ LK+ + D+ E G HDNR+ ++K
Sbjct: 48 SNSKFLKQKDIDDAIKDPEKAGTHDNRIEDEK 79
>04_01_0106 + 1102880-1105691,1105781-1105806
Length = 945
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 57 NMDQFEQLINVSLLKSLIKTQIDE--NVSDNIKSMSEK---LKRLECDNL 191
N D+ +Q+IN ++S Q+D +V N++ +S LK LE N+
Sbjct: 547 NYDRVQQIINAQRIRSFYPYQLDSDYSVMSNVQWVSTSARYLKVLELSNI 596
>12_01_0800 -
7331444-7331539,7331617-7331742,7331830-7331907,
7332515-7332747,7332832-7332871,7333016-7333070,
7333158-7333345,7333416-7333475,7333686-7333769,
7334817-7334903,7335178-7335246,7335354-7335410
Length = 390
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 140 QYQVDERKTKKARMRQSHRQR*DIRYSRQQAE 235
Q+ DER+ K+ R +QS+R+ R+QAE
Sbjct: 288 QWVQDERELKRQRRKQSNRESARRSRLRKQAE 319
>07_03_0061 +
12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +3
Query: 69 FEQLINVSLLKSLIKTQIDENV----SDNIKSMSEKLKRLEC 182
F ++ V +L++L +I + SDN +S+ +K K+L C
Sbjct: 710 FGAMVQVKMLEALQDIEIASKLVGFDSDNDESLDDKYKKLRC 751
>05_05_0148 - 22729469-22730116,22730215-22730589
Length = 340
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 128 KRVGQYQVDERKTKKARMRQSHRQR 202
++VG+Y +ERK + R R +QR
Sbjct: 154 QKVGRYSAEERKERIERYRVKRQQR 178
>11_01_0755 - 6343084-6345172,6345526-6346367
Length = 976
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 125 VDLRFDQRLEQRHVNQLFKLIHINYI 48
+DL L+ HV ++KL+H+ Y+
Sbjct: 582 LDLEECDDLKDDHVKYIYKLLHLKYL 607
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +3
Query: 123 DENVSDNIKSMSEKL 167
DE++ D++KS+SEKL
Sbjct: 78 DEDMQDSVKSLSEKL 92
>05_01_0586 -
5262878-5263054,5263267-5263328,5264350-5264539,
5265467-5265541
Length = 167
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 69 FEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSV 203
F+Q + SL+ S I +V D++ S+ KLK L DN D V
Sbjct: 70 FDQWRSDSLITSTPTKLI--SVDDDVASLHVKLKELVGDNFIDMV 112
>01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976
Length = 363
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 128 KRVGQYQVDERKTKKARMRQSHRQR 202
++VG+Y +ERK + R R QR
Sbjct: 178 QKVGRYSAEERKERIERYRVKRHQR 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,298,003
Number of Sequences: 37544
Number of extensions: 57830
Number of successful extensions: 220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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