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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24k12
         (272 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U68266-1|AAB16981.1|  219|Caenorhabditis elegans RAB-3 protein.        31   0.084
U68265-1|AAB16980.1|  219|Caenorhabditis elegans RAB-3 protein.        31   0.084
U28944-15|AAK68196.1|  219|Caenorhabditis elegans Rab family pro...    31   0.084
U28944-14|AAK68195.1|  233|Caenorhabditis elegans Rab family pro...    31   0.084
AB112928-1|BAD07033.1|  219|Caenorhabditis elegans Rab3 protein.       31   0.084
AL132943-3|CAB81974.1|  345|Caenorhabditis elegans Hypothetical ...    28   1.0  
AF016417-3|AAB65281.1|  457|Caenorhabditis elegans Hypothetical ...    28   1.0  
Z69634-2|CAA93451.2|  926|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical...    27   2.4  
AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    27   2.4  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    26   3.2  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    26   3.2  
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical...    26   3.2  
Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U28732-4|AAB04900.1|  257|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AL132862-28|CAB60545.2|  610|Caenorhabditis elegans Hypothetical...    26   4.2  
Z92830-6|CAB07359.2|  360|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z84574-2|CAB06542.1|  488|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U41268-1|AAA82433.2|  234|Caenorhabditis elegans Temporarily ass...    25   5.5  
AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidas...    25   5.5  
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    25   5.5  
AC024821-2|AAP86610.1|  588|Caenorhabditis elegans Hypothetical ...    25   5.5  
AC024821-1|AAK68901.2|  456|Caenorhabditis elegans Hypothetical ...    25   5.5  
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    25   5.5  
AL132876-15|CAD21668.2|  722|Caenorhabditis elegans Hypothetical...    25   7.3  
AF045643-4|AAC02597.3|  529|Caenorhabditis elegans Ligand-gated ...    25   7.3  
AB096636-1|BAC76736.1|  722|Caenorhabditis elegans tyrosyl-tRNA ...    25   7.3  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U55365-9|AAA98574.1|  346|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U41748-4|AAA83337.2|  230|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U21324-15|AAA62569.1|  142|Caenorhabditis elegans Hypothetical p...    25   9.7  

>U68266-1|AAB16981.1|  219|Caenorhabditis elegans RAB-3 protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.084
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 206
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U68265-1|AAB16980.1|  219|Caenorhabditis elegans RAB-3 protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.084
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 206
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U28944-15|AAK68196.1|  219|Caenorhabditis elegans Rab family
           protein 3, isoform b protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.084
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 206
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U28944-14|AAK68195.1|  233|Caenorhabditis elegans Rab family
           protein 3, isoform a protein.
          Length = 233

 Score = 31.5 bits (68), Expect = 0.084
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 206
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 158 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 206


>AB112928-1|BAD07033.1|  219|Caenorhabditis elegans Rab3 protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.084
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 206
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>AL132943-3|CAB81974.1|  345|Caenorhabditis elegans Hypothetical
           protein Y116F11B.6 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 111 KTQIDENVSDNIKSMSEKLKRLECDNLTDS-VEIYGIHDNRLNNKKI 248
           K +I E+V +NIK    KLK++E  NL +S  E+   H   LN K++
Sbjct: 219 KIRIIEDV-ENIKKQDVKLKKIE-KNLKESRKELKEAHQEYLNRKEL 263


>AF016417-3|AAB65281.1|  457|Caenorhabditis elegans Hypothetical
           protein F17A9.4 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 180 CDNLTDSVEIYGIHDNRLNNKKIRNYYLK 266
           CDNLT S +I G   N  N K  +N +LK
Sbjct: 7   CDNLTVSSKILGEQLNFRNGKTAQNRFLK 35


>Z69634-2|CAA93451.2|  926|Caenorhabditis elegans Hypothetical
           protein B0001.2 protein.
          Length = 926

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 48  DIINMDQFEQLINVSL--LKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYG 215
           D I  D  E ++N+ +  L    +  ++ N+  +   + +  + L+ +  TD+VE+ G
Sbjct: 21  DGIEFDVNEDILNIHMIFLGDFCQINVENNIPISYSKVEDAFRSLKTEVRTDTVEVSG 78


>AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18b protein.
          Length = 586

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 102 SLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEI 209
           +L  TQIDE ++  + ++  +L  L   ++TD  E+
Sbjct: 373 TLTSTQIDELLATGVNTLKSRLDELGMPSVTDVTEL 408


>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 102 SLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEI 209
           +L  TQIDE ++  + ++  +L  L   ++TD  E+
Sbjct: 733 TLTSTQIDELLATGVNTLKSRLDELGMPSVTDVTEL 768


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 42   RVDIINMD-QFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGI 218
            +++  +MD    Q+I   L+ S     IDE   + I  +  K +R++  N+  S     +
Sbjct: 4355 KIECADMDGTHRQIIVKDLVFSPTSMAIDEGKGNRIYWVDPKYRRVDAVNIDGSERTTVV 4414

Query: 219  HDNRL 233
            HD  +
Sbjct: 4415 HDRHI 4419


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 42   RVDIINMD-QFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGI 218
            +++  +MD    Q+I   L+ S     IDE   + I  +  K +R++  N+  S     +
Sbjct: 4355 KIECADMDGTHRQIIVKDLVFSPTSMAIDEGKGNRIYWVDPKYRRVDAVNIDGSERTTVV 4414

Query: 219  HDNRL 233
            HD  +
Sbjct: 4415 HDRHI 4419


>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
           protein Y67A10A.3 protein.
          Length = 1237

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 126 ENVSDNIKSMSEKLKRLECDNLT 194
           E++SD ++S+   L  LEC N+T
Sbjct: 385 EDISDRVESLKGFLAELECYNIT 407


>Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3b protein.
          Length = 634

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 165 LKRLECDNLTDSVEIYGIHDNRLNNKKIRNY 257
           + + +C  +TD    Y   D+R+N++K+RN+
Sbjct: 41  IDKQQCRQITD----YSAKDSRINSRKLRNH 67


>Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3a protein.
          Length = 634

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 165 LKRLECDNLTDSVEIYGIHDNRLNNKKIRNY 257
           + + +C  +TD    Y   D+R+N++K+RN+
Sbjct: 41  IDKQQCRQITD----YSAKDSRINSRKLRNH 67


>U28732-4|AAB04900.1|  257|Caenorhabditis elegans Hypothetical
           protein F45E1.3 protein.
          Length = 257

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 51  IINMDQFEQLINVSLLKSLIK---TQIDENVSDNIKSMSEKLKRLECDNLTDSV 203
           I++ D  ++L +   L + +K   T+I    +DN KS    LKR+  D+L D +
Sbjct: 118 ILSTDLVKELADTVALFTRLKQHGTKIAVCTADNRKSSLLALKRMNVDHLVDMI 171


>AL132862-28|CAB60545.2|  610|Caenorhabditis elegans Hypothetical
           protein Y73F8A.19 protein.
          Length = 610

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 60  MDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIY 212
           +D+ E++ N       ++ Q  ++  DN++ ++    RLECDN +D    +
Sbjct: 474 LDEIERMGNAG---KRLEYQGRKSERDNLQFVNATKTRLECDNYSDMTNAF 521


>Z92830-6|CAB07359.2|  360|Caenorhabditis elegans Hypothetical
           protein F11A5.7 protein.
          Length = 360

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +3

Query: 3   RGLKNIFYAPYTHRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLEC 182
           + ++ IF +   +R ++ N +  E L  V+ ++      I E   D +     KLKR+  
Sbjct: 219 KSVQIIFGSLIINRTNLTNFNFLENLKYVAQMQKDKSAIIVEKNLDLVNISFPKLKRVRS 278

Query: 183 DNLTDSVEIYGIHDN 227
           DNL  S+   G + N
Sbjct: 279 DNL-HSIVFTGNNQN 292


>Z84574-2|CAB06542.1|  488|Caenorhabditis elegans Hypothetical
           protein F33E2.3 protein.
          Length = 488

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 168 KRLECDNLTDSVEIYGIHDNRLNNK 242
           +R  CD++T + E YG+  +RL  +
Sbjct: 363 RRFPCDDVTHTQESYGVDCHRLRRR 387


>Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical
           protein ZK858.1 protein.
          Length = 841

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 153 MSEKLKRLECDNLTDSVEIYG 215
           ++E  + LE DN+ +SV +YG
Sbjct: 132 LAETARGLEADNIAESVMVYG 152


>U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical
           protein C14C11.3 protein.
          Length = 596

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 63  DQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKL 167
           D+ E  +  S+     +  IDE + +N+  MSEKL
Sbjct: 537 DRVESDLRASMKDLYFENTIDEFIYENLGEMSEKL 571


>U41268-1|AAA82433.2|  234|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 81 protein.
          Length = 234

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 48  DIINMDQFEQLINVSLL-KSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 206
           DII  +  E++ +  L  K      +  N S   +S  + +KRL CD + D +E
Sbjct: 124 DIIKEEVLEKMTSPKLRRKEESNMMMFTNSSKRRESTGDFMKRLTCDAIEDELE 177


>AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 596

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 63  DQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKL 167
           D+ E  +  S+     +  IDE + +N+  MSEKL
Sbjct: 537 DRVESDLRASMKDLYFENTIDEFIYENLGEMSEKL 571


>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
           protein 2 protein.
          Length = 1262

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 116 RFDQRLEQRHVNQLFKLIHINYINPMRI 33
           RF+  L+QRHV  L + + +N +   R+
Sbjct: 747 RFESLLQQRHVQLLGRSVDLNRVVSQRV 774


>AC024821-2|AAP86610.1|  588|Caenorhabditis elegans Hypothetical
           protein Y55B1AR.2b protein.
          Length = 588

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 146 QVDERKTKKARMRQSHRQR*DIRYSRQQAE 235
           Q+ + + K+A+  + HR+R D+   R+Q E
Sbjct: 57  QIAKSQAKRAKKEERHRRRVDLSTVREQDE 86


>AC024821-1|AAK68901.2|  456|Caenorhabditis elegans Hypothetical
           protein Y55B1AR.2a protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 146 QVDERKTKKARMRQSHRQR*DIRYSRQQAE 235
           Q+ + + K+A+  + HR+R D+   R+Q E
Sbjct: 57  QIAKSQAKRAKKEERHRRRVDLSTVREQDE 86


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
           protein.
          Length = 1262

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 116 RFDQRLEQRHVNQLFKLIHINYINPMRI 33
           RF+  L+QRHV  L + + +N +   R+
Sbjct: 747 RFESLLQQRHVQLLGRSVDLNRVVSQRV 774


>AL132876-15|CAD21668.2|  722|Caenorhabditis elegans Hypothetical
           protein Y105E8A.19 protein.
          Length = 722

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 165 LKRLECDNLTDSVEIYGIHDNRLNNKKIRNYY 260
           +K L+ D L   VEI G HD  L+ + + ++Y
Sbjct: 476 IKHLKLDGLV-KVEIAGEHDKYLDREYVLDFY 506


>AF045643-4|AAC02597.3|  529|Caenorhabditis elegans Ligand-gated ion
           channel protein 30 protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 180 ILAFLVFRSST*YCPTRFRRFAF*SKT 100
           ++   V  SS  +CP  F+RF F S+T
Sbjct: 177 LVRMFVSISSKSFCPINFKRFPFDSQT 203


>AB096636-1|BAC76736.1|  722|Caenorhabditis elegans tyrosyl-tRNA
           synthetase (cytoplasmic)protein.
          Length = 722

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 165 LKRLECDNLTDSVEIYGIHDNRLNNKKIRNYY 260
           +K L+ D L   VEI G HD  L+ + + ++Y
Sbjct: 476 IKHLKLDGLV-KVEIAGEHDKYLDREYVLDFY 506


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +3

Query: 72  EQLINVSLLKSLIKTQIDENVSDNIKSMSE 161
           EQ+ ++ + +  +   I +N+SDN++S+SE
Sbjct: 422 EQMPDIGIPRGQLIGIIADNLSDNLESLSE 451


>U55365-9|AAA98574.1|  346|Caenorhabditis elegans Hypothetical
           protein C12D5.9 protein.
          Length = 346

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +3

Query: 114 TQIDENVSDNIKSMSEKLK----RLECDNLTDSVEIYGIHDNRLNNKKIRNYYLKK 269
           TQI   ++ N+ S  EK+      +ECD    S E+Y   + +    +  NY +++
Sbjct: 61  TQITVPIAKNMSSACEKITSCFAEIECDEAQRSKEVY---ERKCEKIEFNNYKMQE 113


>U41748-4|AAA83337.2|  230|Caenorhabditis elegans Hypothetical
           protein C31H2.3 protein.
          Length = 230

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 99  KSLIKTQIDENVSDNIKSMSEK 164
           KSLI +Q D+N S+++KS   K
Sbjct: 208 KSLIYSQSDDNNSNDVKSKKAK 229


>U21324-15|AAA62569.1|  142|Caenorhabditis elegans Hypothetical
           protein C35D10.13 protein.
          Length = 142

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
 Frame = +3

Query: 90  SLLKSLIKTQIDENVSDNIK-SMSEK---LKRLECDNL-TDSVEIYGIHDNRLNNKK--I 248
           S+L++  KT  ++ ++ N +  + EK   ++  E + +  DS   + +HD  LN+KK  +
Sbjct: 23  SILENKYKTATNKRITLNERFGVLEKGYTIQATEPETVKNDSDVFFVVHDRNLNSKKEFV 82

Query: 249 RNYYLK 266
            NY  K
Sbjct: 83  ENYLAK 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,215,201
Number of Sequences: 27780
Number of extensions: 63965
Number of successful extensions: 348
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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