Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24k09
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.11 
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    27   2.4  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   3.2  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   9.7  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.7  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   9.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.7  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +2

Query: 116 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 283
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPP 347



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +2

Query: 116 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 283
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPP 401


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 452 PHPLAVSLYNQIFDFHLTHIMSQICIEAKFFLRY 553
           P+  ++S+YNQI D +   I  +      +FLRY
Sbjct: 45  PNSNSISIYNQIADKYSRKITREEIFSGIYFLRY 78


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 188 PPSATSTFSHGQGDEPKATNGTSVA-TNGQST 280
           PP++TS  S+G G  P+   G+S    NG  T
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQT 451


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +2

Query: 92  RLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNG 271
           R    VL P    HT+  +  PE  R G  + P S++ +  +     P + + ++ + NG
Sbjct: 448 RGGKNVLSPEAKEHTHK-NISPESSRFGTPSDPNSSSQSLGNEVLSRPNSNSNSAESRNG 506

Query: 272 QS 277
           ++
Sbjct: 507 ET 508


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 111 SAPPVVATLTSSIPNRSHRGPGAVPFHQ-AQRALSATDK 224
           + P  +A  TS+IPN    GP   P  Q AQ A  ++ K
Sbjct: 16  AVPKSLAGSTSNIPNELFVGPDGRPLSQNAQGASKSSSK 54


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
 Frame = +2

Query: 68  NVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATST--------FSHGQ 223
           N   N G   S+     P    T     +P    T   A P S+TST        FS G+
Sbjct: 147 NNSFNFGKPASTTNTTTPAAASTGSLFGKPAATGTTSNAPPASSTSTTPATGSGGFSFGK 206

Query: 224 GDEPKATNGTSVATNGQS 277
                +TN  S +T   S
Sbjct: 207 PASLGSTNNASTSTTANS 224


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 116 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 283
           PP    +N   S P PP+ GR A PP    + +   G +P   + +   +N  + P
Sbjct: 339 PPPPPRSNAAGSIPLPPQ-GRSAPPPPPPRS-APSTGRQPPPLSSSRAVSNPPAPP 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,925
Number of Sequences: 5004
Number of extensions: 42531
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)