Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24k08
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                62   7e-12
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    56   5e-10
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    49   4e-08
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    49   5e-08
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    48   7e-08
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    48   7e-08
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    48   9e-08
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          25   0.97 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          24   1.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          24   1.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          24   1.3  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          24   1.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          24   1.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          24   1.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    24   1.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.2  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 61.7 bits (143), Expect = 7e-12
 Identities = 45/139 (32%), Positives = 73/139 (52%)
 Frame = +1

Query: 298 IGEGTYGIVYRAKNKANGSIVALKKVRMDVEKDGLPLSGLREIQVLMSCRHENIVQLKEV 477
           +G G +GIVY+A  K  G  VA K ++   EK    L+  +    L   +H NIV++  +
Sbjct: 73  LGSGGFGIVYKALYK--GEQVAAKIIQ--TEKYSNMLNSEKHASFL---KHSNIVKVLMI 125

Query: 478 LVGRSLESIFLSMEYCEQDLASLLDNMSSPFTESQVKCLMLQVLKGLKYLHSNFIVHRDL 657
             G SL  I  +ME C   L + LD   +   +++  C++  +   L++ H+  IVH D+
Sbjct: 126 EQGASLSLI--TMELCGTTLQNRLDE--AILIKNERICILKSITCALQFCHNAGIVHADV 181

Query: 658 KVSNLLLTDKGCVKIADFG 714
           K  N+L++  G  K+ DFG
Sbjct: 182 KPKNILMSKNGQPKLTDFG 200


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 55.6 bits (128), Expect = 5e-10
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
 Frame = +1

Query: 331 AKNKANGSIVALKKVRMDV--EKDGLPLSGLREIQVLMSCRHENIVQLKEVLVGRSLESI 504
           A+ K    + A+K ++ D+  + D +  + + +  + +S +   +VQL      ++++ +
Sbjct: 3   AERKGTDELYAIKILKKDIIIQDDDVECTMVEKRVLALSTKPPFLVQLHSCF--QTMDRL 60

Query: 505 FLSMEYCEQDLASLLDNMSSPFTESQVKCLMLQVLKGLKYLHSNFIVHRDLKVSNLLLTD 684
           +  MEY               F E        ++  GL +LH   IV+RDLK+ N+LL  
Sbjct: 61  YFVMEYVNGGDLMYQIQQCGKFKEPVAVFYASEIAIGLFFLHGRGIVYRDLKLDNVLLDQ 120

Query: 685 KGCVKIADFGLAR 723
            G +KIADFG+ +
Sbjct: 121 DGHIKIADFGMCK 133


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 49.2 bits (112), Expect = 4e-08
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
 Frame = +1

Query: 502 IFLSMEYC-EQDLASLLDNMSSPFTESQVKCLMLQVLKGLKYLHSNFIVHRDLKVSNLLL 678
           +++ ME C   +L ++L +    F +   +     V++   YLHS  I++RDLK  NLLL
Sbjct: 441 LYMLMEACLGGELWTVLRDKGH-FDDGTTRFYTACVVEAFDYLHSRNIIYRDLKPENLLL 499

Query: 679 TDKGCVKIADFGLARWL 729
             +G VK+ DFG A+ L
Sbjct: 500 DSQGYVKLVDFGFAKRL 516


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 48.8 bits (111), Expect = 5e-08
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
 Frame = +1

Query: 568 FTESQVKCLMLQVLKGLKYLHSNFIVHRDLKVSNLLLTDK---GCVKIADFGLA 720
           ++E+     + Q+L+ + + H N +VHRDLK  NLLL  K     VK+ADFGLA
Sbjct: 6   YSEADASHCIQQILESVHHCHHNGVVHRDLKPENLLLASKAKGAAVKLADFGLA 59


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 48.4 bits (110), Expect = 7e-08
 Identities = 20/41 (48%), Positives = 30/41 (73%)
 Frame = +1

Query: 592 LMLQVLKGLKYLHSNFIVHRDLKVSNLLLTDKGCVKIADFG 714
           + L VL+G++YLHS  +VHRD+K+ N+LL  +   K+ DFG
Sbjct: 702 IALDVLEGIRYLHSQGLVHRDVKLKNVLLDIENRAKLTDFG 742


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 48.4 bits (110), Expect = 7e-08
 Identities = 20/41 (48%), Positives = 30/41 (73%)
 Frame = +1

Query: 592 LMLQVLKGLKYLHSNFIVHRDLKVSNLLLTDKGCVKIADFG 714
           + L VL+G++YLHS  +VHRD+K+ N+LL  +   K+ DFG
Sbjct: 740 IALDVLEGIRYLHSQGLVHRDVKLKNVLLDIENRAKLTDFG 780


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 48.0 bits (109), Expect = 9e-08
 Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
 Frame = +1

Query: 298  IGEGTYGIVYRAKNKA--NGSI---VALKKVRMDVEKDGLPLSGLREIQVLMSCRHENIV 462
            IG G +G V R K K   +G     VA+K ++     D      L E  ++    H N++
Sbjct: 639  IGGGEFGDVCRGKLKLPPDGRTEIDVAIKTLKPG-SADKARNDFLTEASIMGQFEHPNVI 697

Query: 463  QLKEVLVGRSLESIFLSMEYCEQ-DLASLLDNMSSPFTESQVKCLMLQVLKGLKYLHSNF 639
             L+ V+   +   + +  E+ E   L + L      F   Q+  ++  +  G++YL    
Sbjct: 698  FLQGVVTKSN--PVMIITEFMENGSLDTFLRANDGKFQVLQLVGMLRGIASGMQYLAEMN 755

Query: 640  IVHRDLKVSNLLLTDKGCVKIADFGLAR 723
             VHRDL   N+L+      KIADFGL+R
Sbjct: 756  YVHRDLAARNVLVNAALVCKIADFGLSR 783


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 551 SSNEAKSCSQYSIERKMLSS-ERPTNTSLSC 462
           S NE K+C +Y+I    L S  R    + SC
Sbjct: 200 SENETKTCKKYAISSNSLGSRSRSFQRTSSC 230


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 551 SSNEAKSCSQYSIERKML-SSERPTNTSLSC 462
           S NE K+C +Y+I    L S  R    + SC
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQRTSSC 230


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 551 SSNEAKSCSQYSIERKML-SSERPTNTSLSC 462
           S NE K+C +Y+I    L S  R    + SC
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQRTSSC 230


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 551 SSNEAKSCSQYSIERKML-SSERPTNTSLSC 462
           S NE K+C +Y+I    L S  R    + SC
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQRTSSC 230


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 551 SSNEAKSCSQYSIERKML-SSERPTNTSLSC 462
           S NE K+C +Y+I    L S  R    + SC
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQRTSSC 230


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 551 SSNEAKSCSQYSIERKML-SSERPTNTSLSC 462
           S NE K+C +Y+I    L S  R    + SC
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQRTSSC 230


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 551 SSNEAKSCSQYSIERKML-SSERPTNTSLSC 462
           S NE K+C +Y+I    L S  R    + SC
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQRTSSC 230


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 551 SSNEAKSCSQYSIERKML-SSERPTNTSLSC 462
           S NE K+C +Y+I    L S  R    + SC
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQRTSSC 230


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 26  CSRY*NCVIVYSSLNSKYKYSFVTIQIYLN*KECLKVR 139
           C  Y    I+YSSL+S Y    + + +Y N  + L+ R
Sbjct: 336 CLFYNTDFIIYSSLSSFYIPCIIMVFLYYNIFKALRNR 373


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 518 SIERKMLSSERPTNTSLSCTMFSCRHDIST*ISRRPLSGRPSFSTSI 378
           +IE+K   SE   +TS+         D S+  + +PL  +P  + S+
Sbjct: 337 NIEKKYPPSETEQSTSMDLPSDQVEPDNSSNFAMKPLVRQPEDTMSV 383


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 518 SIERKMLSSERPTNTSLSCTMFSCRHDIST*ISRRPLSGRPSFSTSI 378
           +IE+K   SE   +TS+         D S+  + +PL  +P  + S+
Sbjct: 337 NIEKKYPPSETEQSTSMDLPSDQVEPDNSSNFAMKPLVRQPEDTMSV 383


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = +3

Query: 183 WDEKRCSYIFQNGK--NNGN 236
           WD + C++I  NGK  ++GN
Sbjct: 116 WDFQECTFISVNGKEVHSGN 135


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 710 KSAILTQPLSVKRRLDTFKSLCTM 639
           KS     P+S  + +D F S+CT+
Sbjct: 293 KSQASLPPVSYLKAVDAFMSVCTV 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,158
Number of Sequences: 438
Number of extensions: 4206
Number of successful extensions: 22
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)