Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24k06
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    28   1.5  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   6.0  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   6.0  
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch...    26   6.0  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   7.9  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   7.9  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   7.9  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    25   7.9  

>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 273 LNNLFASYTLNRTDVMELYNIKYAIDPTNKIVIEQ 377
           L  +F   T +  D M  YN K + DPT+ ++ ++
Sbjct: 76  LYGMFLEATASEKDAMSYYNSKLSEDPTHTVIYKR 110


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 650 FLLCFIIHDCRWQIAKHKAFIAHVEIKTSVFEFQR 546
           FL+  I    +W   +HKAF+    I+++ FE  R
Sbjct: 298 FLISSIYEIWKWCRIRHKAFLLDEHIRSNKFEDTR 332


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 321 ELYNIKYAIDPTNKIVIEQV 380
           +LYNI+YA+ PT +I I ++
Sbjct: 621 QLYNIQYAMLPTKRISIRKL 640


>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = -1

Query: 664 DPMRSFCFVSLFTIAAGKLPNTKRLLHTWKLKQVFSSFNGSKLPSSLKTLIIVFNTSCVK 485
           +P      +S+F +   ++ +  R    W L+ ++++ N   LP  + +L I+ + + +K
Sbjct: 11  NPQTKSIGISIFLMMITRVIDFSRPSLLWPLRILYATINEFNLPWFIYSLTIL-DLTVLK 69

Query: 484 IIELTTP 464
            +E  TP
Sbjct: 70  YVEPATP 76


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 327 YNIKYAIDPTNKIVIEQVDNVDAFVHILEPG 419
           Y  KYAI+  ++ +  ++ ++   V I+EPG
Sbjct: 115 YGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
 Frame = -3

Query: 638 FIIHDCRWQIAK------HKAFIAHVEIKTSVFEFQ 549
           F+I  C W I +         FI H  +   VFEFQ
Sbjct: 182 FLITSCNWTIQELEERFTKNGFIVHSTVPVPVFEFQ 217


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 102 SLVFQN*TGFTSRILRVKHNQNM-MSFVIKIKLMSCFAH 215
           SLVFQN  G T+ +    H   + + +++ +K    F+H
Sbjct: 474 SLVFQNELGLTNTVWEAAHGGMLGIKYLVAVKYPLFFSH 512


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 327 YNIKYAIDPTNKIVIEQVDNVDAFVHILEPG 419
           Y  KYAI+  ++ +  ++ ++   V I+EPG
Sbjct: 115 YGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,327
Number of Sequences: 5004
Number of extensions: 55528
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)