Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24k06
         (703 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118354-1|AAM48383.1| 1351|Drosophila melanogaster RE01412p pro...    29   8.1  
AJ291605-1|CAC20097.1| 1351|Drosophila melanogaster gamma tubuli...    29   8.1  
AE014296-2076|AAF49973.2| 1351|Drosophila melanogaster CG5688-PA...    29   8.1  

>AY118354-1|AAM48383.1| 1351|Drosophila melanogaster RE01412p protein.
          Length = 1351

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
 Frame = +3

Query: 273  LNNLFASYTLNRTDVME--LYNIKYAIDPTNKIVIEQVDNVDAFVHILEP-GQEVFDETL 443
            L N  A+ + + T V E    N     D  N + +E    +     I  P    +  ET+
Sbjct: 1080 LTNALAACSADETTVSENLTLNCTTIPDTLNFLSVEATSMLKLNCKIDWPLNMVISSETI 1139

Query: 444  SRYHQFPGVVSSIIFTQLVLNTIISVLSEDGSLLPLKLENTCFNF 578
            S+Y Q  G +  +     VL+     L + G LL  +L  TC +F
Sbjct: 1140 SKYGQIFGYLLKLRHVSFVLDGTYEYLQQMGKLLGPEL-RTCTHF 1183


>AJ291605-1|CAC20097.1| 1351|Drosophila melanogaster gamma tubulin
            ring protein protein.
          Length = 1351

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
 Frame = +3

Query: 273  LNNLFASYTLNRTDVME--LYNIKYAIDPTNKIVIEQVDNVDAFVHILEP-GQEVFDETL 443
            L N  A+ + + T V E    N     D  N + +E    +     I  P    +  ET+
Sbjct: 1080 LTNALAACSADETTVSENLTLNCTTIPDTLNFLSVEATSMLKLNCKIDWPLNMVISSETI 1139

Query: 444  SRYHQFPGVVSSIIFTQLVLNTIISVLSEDGSLLPLKLENTCFNF 578
            S+Y Q  G +  +     VL+     L + G LL  +L  TC +F
Sbjct: 1140 SKYGQIFGYLLKLRHVSFVLDGTYEYLQQMGKLLGPEL-RTCTHF 1183


>AE014296-2076|AAF49973.2| 1351|Drosophila melanogaster CG5688-PA
            protein.
          Length = 1351

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
 Frame = +3

Query: 273  LNNLFASYTLNRTDVME--LYNIKYAIDPTNKIVIEQVDNVDAFVHILEP-GQEVFDETL 443
            L N  A+ + + T V E    N     D  N + +E    +     I  P    +  ET+
Sbjct: 1080 LTNALAACSADETTVSENLTLNCTTIPDTLNFLSVEATSMLKLNCKIDWPLNMVISSETI 1139

Query: 444  SRYHQFPGVVSSIIFTQLVLNTIISVLSEDGSLLPLKLENTCFNF 578
            S+Y Q  G +  +     VL+     L + G LL  +L  TC +F
Sbjct: 1140 SKYGQIFGYLLKLRHVSFVLDGTYEYLQQMGKLLGPEL-RTCTHF 1183


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,292,514
Number of Sequences: 53049
Number of extensions: 569034
Number of successful extensions: 1463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)