Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24k06
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81122-5|CAB03357.1|  579|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U28943-8|AAK68293.1|  325|Caenorhabditis elegans Serpentine rece...    27   9.8  

>Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical
           protein ZK550.2 protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -1

Query: 412 SRICTNASTLSTCSITILFVGSIAYLILYNSITSVRFNV*LANKLFNYQSGFTRRILLVK 233
           S I TN   +ST   T+L+    +  ILYN I  +     + + L N+  G TR   + K
Sbjct: 273 SMIATNIEVMSTPLTTVLYDWKDSQAILYNGI--IESITCIVSVLINFGIGKTRIGKIDK 330

Query: 232 RV 227
           R+
Sbjct: 331 RI 332


>Z81122-5|CAB03357.1|  579|Caenorhabditis elegans Hypothetical
           protein T13F2.6 protein.
          Length = 579

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 550 NGSKLPSSLKTLIIVFNTSCVKIIELTTPGNWWYRLSV 437
           NGS    S K  I V +  C+ ++   TPGN W +L +
Sbjct: 69  NGSFSFDSSKKQIHVKSVKCIYMLPKATPGNKWAQLKL 106


>U28943-8|AAK68293.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 58 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -1

Query: 541 KLPSSLKTL-IIVFNTSCVKIIELTTPGNWWYRLSVSSNTS 422
           K P++L  L I ++NTSCV+I  +T      +RL  +SN++
Sbjct: 37  KSPATLDGLKIFLYNTSCVQIALITFAFLSQHRLLTNSNSA 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,678,323
Number of Sequences: 27780
Number of extensions: 317410
Number of successful extensions: 824
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)