Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24k05
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    33   0.27 
02_01_0405 - 2952434-2955583                                           30   1.4  
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    30   1.9  
02_01_0406 - 2958933-2962076                                           29   2.5  
09_02_0177 - 5390594-5390692,5391924-5391998,5392843-5392942,539...    29   4.4  
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    28   5.8  
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335...    28   7.7  
03_05_1070 + 30125131-30127029                                         28   7.7  

>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 612 PADLHDAVPGYSGAHASPPSTEIVAAGGKNNCAWRSVQE 496
           PADL D + G  G+H  P ST+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>02_01_0405 - 2952434-2955583
          Length = 1049

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +2

Query: 413 CLEHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATISVEGGDACAPEYPGT 592
           C +H+    I  L   L +  N  +L+ SCTE+     L     +S +GG A A    GT
Sbjct: 8   CKKHSNKFPIPVLALALVLLINLASLTSSCTEQDRSSLLRFLRELSQDGGLA-ASWQDGT 66

Query: 593 ASCKSAGV-CSSAGXXMD 643
             CK  G+ CS      D
Sbjct: 67  DCCKWDGITCSQDSTVTD 84


>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 521 LFLPPAATISVEGGD--ACAPEYPGTASCKSAGVCSSA 628
           L +PP    +V  GD  + A + P  ASC++AG C++A
Sbjct: 99  LQIPPPERRAVGDGDLLSSAGDLPDAASCRAAGSCAAA 136


>02_01_0406 - 2958933-2962076
          Length = 1047

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +2

Query: 419 EHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATISVEGGDACAPEYPGTAS 598
           +H+    I  L   L +  N  +L+ SCTE+     L     +S +GG   A    GT  
Sbjct: 8   KHSNKFPIPVLALALVLLINLASLTSSCTEQDRSSLLKFIRELSQDGG-LSASWQDGTDC 66

Query: 599 CKSAGV-CSSAGXXMD 643
           CK  G+ CS  G   D
Sbjct: 67  CKWDGIACSQDGTVTD 82


>09_02_0177 -
           5390594-5390692,5391924-5391998,5392843-5392942,
           5393143-5393244,5393335-5393444,5393896-5393968,
           5394976-5395043,5395382-5395475,5396804-5397165
          Length = 360

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 489 CRTLVPNATRSYFCHQQQ---RFPSKGVTHVHLNTL 587
           C  L P    SYFC QQ    R+P+ G++   +N L
Sbjct: 100 CCRLPPKIDISYFCGQQTSSWRYPTMGISKTEVNLL 135


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 416 LEHNYTREIVRLMTTLPVPSNRNTLS 493
           L+H  TR+++ L    PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172


>09_04_0161 -
           15232074-15232139,15232299-15232406,15233417-15233506,
           15233617-15233733,15234408-15234527,15234930-15236168
          Length = 579

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 317 TPKSRIRAVMTASMRMIAPVFSTSTSRHFSKAR 219
           TP SR+    T + R + PV +T T  H S  R
Sbjct: 89  TPSSRVSTPSTPASRSVTPVRNTVTEGHKSSRR 121


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 540 AAGGKNNCAWRSVQECDS-VLRLD 472
           A GG+   AWRS    DS VLRLD
Sbjct: 521 AGGGRGEAAWRSTATQDSQVLRLD 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,940,562
Number of Sequences: 37544
Number of extensions: 334265
Number of successful extensions: 965
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)