Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24k04
         (238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    26   0.76 
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    25   1.0  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   1.3  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        24   3.1  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    23   4.1  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    23   4.1  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        23   5.4  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    23   5.4  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    23   7.1  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    22   9.4  

>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -1

Query: 157 QNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGE 50
           Q+ +G  + +H ++DR++     ++ H +    DGE
Sbjct: 336 QSASGAELFLHALYDRLVNEGVIVISHITQEGSDGE 371


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 7   SKFKNAFASVSTTFVHHPI 63
           SKF  AFAS+S+ F+H+ +
Sbjct: 46  SKFVYAFASISSGFLHYQL 64


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 151 QNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGEQKLLKRLQRHF 17
           Q+ R + ++++FD   +R A I+      R+D  + L KR++  F
Sbjct: 692 QHSRQMLLYNLFDIAQSRKAPILIIGLTTRYDCSESLEKRVKSRF 736


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 68  HRKMINDAGGSCHNTVKYMVDIYG 139
           + KM N+AGG       Y + +YG
Sbjct: 72  NEKMANEAGGKIFTYGSYRLGVYG 95


>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 969

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 73   KNDQRCGRIVS*HGQIHGGHLRSVRFDFANALLVCRPVAEHI 198
            K +++  R+V     +H  HL   RF  A+   VC+   +++
Sbjct: 880  KEEEKIERVVEVMKTLHPAHLSVFRFLIAHLGRVCKHAEKNL 921


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 167 CSFADQLLSTFIAXNYLCYFYRR 235
           C + +   S F A   LCYFY R
Sbjct: 344 CGYYELAWSIFQANMELCYFYPR 366


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +2

Query: 149 LILRTPCSFADQLLSTFIAXNYLCYFY 229
           L+L  PCS     L  F      CY Y
Sbjct: 47  LLLHLPCSIYSHTLHFFHHFTIACYHY 73


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 133 LRSVRFDFANALLVCRPVAEHI 198
           LR+ R D   +LL+C P  +HI
Sbjct: 130 LRAPRGDATESLLLCVPWKDHI 151


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 145 RFDFANALLVCRPVA 189
           R+DF  +L  C+P+A
Sbjct: 553 RWDFTTSLTACQPIA 567


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +2

Query: 44  LLFTIPSKHRKMINDAGGSCHNTVKYMVDIYGASVLILRTPCSFA 178
           +LF  P  +  +     G  H    +M D+  + +  L T C +A
Sbjct: 34  ILFCCPGIYLAVTGLGAGGGHPDAYHMADVTNSLLYALFTVCGWA 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 939,846
Number of Sequences: 5004
Number of extensions: 15263
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)