Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24k04
         (238 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    31   0.17 
04_04_0402 + 24948451-24948559,24948862-24949115                       27   1.6  
01_06_1581 + 38428780-38430333                                         27   2.1  
07_03_1362 - 26006159-26006461,26006691-26006841,26006975-260072...    27   2.8  
05_05_0026 + 21645845-21647404                                         27   2.8  
04_03_0331 + 14510848-14511124,14511139-14511528,14511708-145119...    26   4.9  
01_06_1121 - 34657505-34658161                                         26   4.9  
07_03_1151 + 24385272-24386543                                         25   8.6  
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805...    25   8.6  

>09_04_0496 +
           18079905-18081586,18084825-18084868,18086396-18086502,
           18087069-18087674,18087789-18088013,18088102-18088167,
           18088268-18088336,18088511-18088582,18088672-18088848,
           18089978-18090115
          Length = 1061

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 95  GSCHNTVKYMVDIYGASVLILRTP 166
           G CHN VK +  IYG + L+L  P
Sbjct: 546 GDCHNAVKLLSKIYGRNPLLLLAP 569


>04_04_0402 + 24948451-24948559,24948862-24949115
          Length = 120

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 53  TIPSKHRKMINDAGGSCHNTVKYMVDIYG 139
           T    H K+IND    C + + Y +  YG
Sbjct: 72  TFACPHNKLINDVNNGCADEMFYTIHTYG 100


>01_06_1581 + 38428780-38430333
          Length = 517

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 95  GSCHNTVKYMVDIYGASVLILRTPC 169
           G CH  +K + ++YG  +++  + C
Sbjct: 478 GDCHAAIKMVAEVYGREIILRDSNC 502


>07_03_1362 -
           26006159-26006461,26006691-26006841,26006975-26007212,
           26007293-26007503,26007631-26007755,26007895-26008023,
           26008540-26009326
          Length = 647

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 118 IHGGHLRSVRFDFANALLVCRPVAEHIYC 204
           +HGG  R++   F  ALL   P A  + C
Sbjct: 1   MHGGGARALAAAFVLALLAAAPAASEVVC 29


>05_05_0026 + 21645845-21647404
          Length = 519

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 145 GRSVNVHHVFDRVMTRSARIVDHFSMFRWDGEQK 44
           GR+V+VH V   V+T +   VDH    R+D   K
Sbjct: 85  GRTVHVH-VLGNVLTANPATVDHMLRCRFDNYPK 117


>04_03_0331 +
           14510848-14511124,14511139-14511528,14511708-14511997,
           14512080-14512154,14512194-14512409,14512727-14512795,
           14512941-14513891
          Length = 755

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 132 MSTMYLTVL*HDPPASLIIFLCLDGMVNKSC 40
           MST Y  V  H PP +L+  LCL  + + +C
Sbjct: 689 MST-YNHVFPHPPPGTLLPILCLQFLTSITC 718


>01_06_1121 - 34657505-34658161
          Length = 218

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +2

Query: 23  PLQAFQQLLFTIPSKHRKMINDAGGSCHNTVKYMVDIYGASVLILRTPC 169
           P  A +  L      H   + DA       ++ M    G +VLI R+PC
Sbjct: 150 PAPAARSALLAAAGAHPVELGDAHRELEAELRKMAPPNGRTVLIFRSPC 198


>07_03_1151 + 24385272-24386543
          Length = 423

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 191 SATGRQTSKAFAKSKRTLRKCPPC--I*PCYDTIRPHR 84
           S+  +Q  +A A +KRT  +CP C  +   Y  +  HR
Sbjct: 276 SSKKKQQPRAAAPAKRTRYECPGCGKVFASYQALGGHR 313


>02_05_1337 -
           35780076-35780290,35780377-35780408,35780490-35780584,
           35780670-35780743,35780851-35780986,35781072-35781135,
           35781333-35781395,35781514-35781656,35781752-35781889,
           35781973-35782094,35782210-35782375,35782647-35782652,
           35782988-35783059,35783241-35783348,35783719-35783848,
           35783964-35784070,35784896-35785005,35785302-35785435,
           35785528-35785982,35786068-35786595
          Length = 965

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 59  PSKHRKMINDAGGSCHNTVKYMVDIYGASVLILRTPCSFADQL 187
           P++      D GG+  + V+Y  + YG ++     PC    +L
Sbjct: 440 PTRELTFPVDEGGTVKSVVQYFQETYGFAIQHTYLPCLTVQRL 482


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,211,942
Number of Sequences: 37544
Number of extensions: 102271
Number of successful extensions: 254
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)