Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24k04
(238 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022969-1|AAB69894.3| 391|Caenorhabditis elegans Hypothetical ... 27 2.4
U88171-1|AAB42251.2| 630|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical pr... 26 4.1
U64844-9|AAB18309.1| 330|Caenorhabditis elegans Serpentine rece... 25 5.4
U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical pr... 25 5.4
AL117206-10|CAB60452.2| 258|Caenorhabditis elegans Hypothetical... 25 5.4
AC024765-6|AAF60526.2| 254|Caenorhabditis elegans Smn (survival... 25 7.2
Z92830-1|CAB07354.1| 342|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z48716-1|CAA88601.1| 482|Caenorhabditis elegans Hypothetical pr... 25 9.5
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 25 9.5
AF024493-11|AAK68347.1| 432|Caenorhabditis elegans Hypothetical... 25 9.5
>AF022969-1|AAB69894.3| 391|Caenorhabditis elegans Hypothetical
protein C29G2.5 protein.
Length = 391
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 95 GSCHNTVKYMVDIYGASVLILRTPCSFADQLL 190
G V +++ IYG+ L++ PC F+ Q L
Sbjct: 274 GCTFKCVIFLLLIYGSCALLITQPCFFSTQYL 305
>U88171-1|AAB42251.2| 630|Caenorhabditis elegans Hypothetical
protein F25F8.1 protein.
Length = 630
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = -1
Query: 208 VXNKCAQQLVGKRARRSQNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGEQKLLKRL 29
V C Q L G+ +RRS+ + + V V + ++ + + R + +++L+ RL
Sbjct: 67 VLRSCVQSLEGRCSRRSEVAHQQKVAVKQLVAKIEVILLNELSGYVERRNEPDRRLISRL 126
Query: 28 QR 23
R
Sbjct: 127 NR 128
>Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical
protein F57A8.5 protein.
Length = 352
Score = 25.8 bits (54), Expect = 4.1
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 2 IYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTVKYMVDIYGASVLIL-RTPCSFA 178
I+Q+ + L F ++ T+ K KM+N G + V ++ +Y S L R C
Sbjct: 188 IFQHTILKLTYFCGVMRTVNEKRSKMMNPGGQEIYPDV--ILQLYEKSKSTLHRICCQPL 245
Query: 179 DQLLSTFIAXNYLC 220
D+LL + C
Sbjct: 246 DKLLEWEVTDEEYC 259
>U64844-9|AAB18309.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein212 protein.
Length = 330
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 125 VDIYGASVLILRTPCSFADQLLSTFIAXNYLCYF 226
V +YGA +I TP S LS + C+F
Sbjct: 32 VHVYGAYCIIFHTPSSMKSVKLSLLNFHFFSCFF 65
>U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical
protein C25G6.5 protein.
Length = 455
Score = 25.4 bits (53), Expect = 5.4
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -1
Query: 154 NQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGEQKLLKRLQR 23
N N R + H+FDRV RS R+V +F GEQ+ LK+ R
Sbjct: 329 NHNFR-IEFMHLFDRVGLRSLRVV----IF---GEQESLKKSMR 364
>AL117206-10|CAB60452.2| 258|Caenorhabditis elegans Hypothetical
protein Y67A10A.2 protein.
Length = 258
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +2
Query: 155 LRTPCSFADQLLSTFI--AXNYLCYFY 229
+RTP + A Q LSTFI A N+ FY
Sbjct: 168 IRTPLNQASQCLSTFIIEATNFRYNFY 194
>AC024765-6|AAF60526.2| 254|Caenorhabditis elegans Smn (survival of
motor neuron)protein interactor protein 1, isoform a
protein.
Length = 254
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 27 CKRFNNFCSPSHLNIEK*STMRADRVITRSNTWW 128
C++F + L IEK S MR DR+ + W
Sbjct: 94 CRKFEETRAKMALKIEKFSPMRIDRLNSPEEEEW 127
>Z92830-1|CAB07354.1| 342|Caenorhabditis elegans Hypothetical
protein F11A5.1 protein.
Length = 342
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +3
Query: 117 NTWWTFTERPF 149
+TWW F RPF
Sbjct: 137 HTWWRFARRPF 147
>Z48716-1|CAA88601.1| 482|Caenorhabditis elegans Hypothetical
protein F59B10.2 protein.
Length = 482
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = -1
Query: 172 RARRSQNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRW 59
R RRS+ + N+H++ + V+ +++D F+ +
Sbjct: 409 RRRRSEEPHTCQENIHNMIESVIDTHVQMLDDFNRMEY 446
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -1
Query: 211 IVXNKCAQQLVGKRARRSQNQNGRSVNVHHVFDRVMTRSARIV 83
I+ N +V + S+N G ++V H FDR+ +V
Sbjct: 182 IILNDSDFSIVKETKYTSKNTGGHDIDVIHQFDRLSANGNYLV 224
>AF024493-11|AAK68347.1| 432|Caenorhabditis elegans Hypothetical
protein F23F1.9 protein.
Length = 432
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 17 KMPLQAFQQLLFTIPSKHRKMINDAG 94
K+P+ FQQ L PSK KM G
Sbjct: 368 KVPITPFQQALSYQPSKLEKMFQALG 393
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,412,805
Number of Sequences: 27780
Number of extensions: 93734
Number of successful extensions: 255
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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