Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24k04
         (238 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   0.22 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   3.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   3.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   6.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   6.2  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              19   8.3  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              19   8.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 0.22
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +2

Query: 35  FQQLLFTIPSKHRKMINDAGGSCHNTVKYMVD-IYGASVLI----LRTPCSFADQL 187
           FQ+LL + P KH  +I      C N +K++++ +Y   + +    L++    ADQL
Sbjct: 61  FQKLLLSNPCKHPTIIMPQ-DVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQL 115


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -1

Query: 217 QIIVXNKCAQQLVGKRARRSQNQNGRSVNV 128
           Q +   +  QQ+VGK  ++   Q  +  N+
Sbjct: 241 QPLTQQQYQQQIVGKYLQQQAGQQDQQANI 270


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = +2

Query: 62   SKHRKMINDAGGSCHNTVKYMVDI 133
            ++ ++M+ +AG    +   Y+VD+
Sbjct: 1172 TRRQEMMREAGRGIESAKSYVVDV 1195


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 27  CKRFNNFCSPSHLNIEK*STMRADRVITRS 116
           C RF    SPS   IE   T + D+  + S
Sbjct: 568 CPRFRKLDSPSDSGIES-GTEKPDKPASSS 596


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 178  RPVAEHIY 201
            RP++EHIY
Sbjct: 1328 RPLSEHIY 1335


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 214 IIVXNKCAQQLVGKRARRSQNQNG 143
           ++  N   QQL  +  ++ Q+ NG
Sbjct: 108 VVYGNPQQQQLAAETQQQQQHNNG 131


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 116 KYMVDIYGASVLILRTPCSFA 178
           K M++ YG     LR  CS A
Sbjct: 64  KGMINQYGGEQPTLRLLCSIA 84


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 18  KCLCKRFNNFCSPSHLN 68
           +CL K+FN +    + N
Sbjct: 64  ECLIKKFNGYDDGGNFN 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,214
Number of Sequences: 438
Number of extensions: 894
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)