Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24j11
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    29   0.60 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.8  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   4.2  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 YAAYLSRPKLENRSERFQTFHTFLQ 397
           Y  YLS  KLEN SE     +TFLQ
Sbjct: 205 YTRYLSTRKLENDSETVTWLNTFLQ 229


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 437 LNYSCPECRARCHFAGTYEMSGIFLSGFPAWVAINMQRMF 318
           L Y    C++RC   G  + SG FL+    + A+  Q++F
Sbjct: 508 LMYGLRTCKSRCIEIGGEQFSG-FLTNIKPFEAVTFQKLF 546


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 257 FQREMFEIVPHEHSCEAFSSQTY 325
           F+RE++E +P E SC+  +++ +
Sbjct: 641 FERELWEAIPVEPSCQDLANRVF 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,486
Number of Sequences: 5004
Number of extensions: 39293
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)