Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24j11
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0626 + 4596022-4596462,4596549-4596667,4596745-4596801,459...    28   4.3  
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444...    28   4.3  
03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427...    27   9.9  

>03_01_0626 +
           4596022-4596462,4596549-4596667,4596745-4596801,
           4596921-4597159,4597261-4597379,4597488-4597574,
           4597673-4597720
          Length = 369

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 289 VWYNLKHFTLKLVFPMR*GLK*SLKEFLS*AAASLCFC 176
           VW+   H +   +FP++  L+  +K F S AA+ +  C
Sbjct: 48  VWFIPLHLSFAFLFPLQRFLQCQMKNFASAAASGVALC 85


>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
            4441075-4441120,4442470-4442521,4442601-4442753,
            4443338-4443457,4443549-4443714,4443822-4443934,
            4444049-4444120,4444992-4445213,4445270-4445317,
            4445639-4445697,4445809-4445887,4445982-4446119,
            4446327-4446551,4446643-4447430,4447548-4447723,
            4447911-4448169,4448646-4448707,4451055-4451212,
            4451618-4451743,4452197-4452260,4452386-4452494,
            4452607-4452760,4453055-4453178,4453257-4453333,
            4453442-4453494,4453673-4453727,4453833-4454021
          Length = 1379

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 272  FEIVPHEHSCEAFSSQTYAAYLSRPKLENRSE 367
            F I+ H+H C A+       YLS PK +  SE
Sbjct: 1050 FSILLHQHWCFAYLLINMGIYLSTPKTDKFSE 1081


>03_05_0229 -
           22142255-22142344,22142471-22142527,22142621-22142705,
           22143552-22143677,22143750-22143793,22143877-22143999,
           22144078-22144216,22148795-22151292
          Length = 1053

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -3

Query: 104 SLHIFCSEFLISNGKLIFFRFYYQYVFVKICDV 6
           SL +FC    + N ++ ++RF+++   + +CD+
Sbjct: 732 SLTLFCDNVSMDNIEVSYYRFFWRLKSLILCDM 764


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,649,059
Number of Sequences: 37544
Number of extensions: 230638
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)