Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24j11
         (550 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT012319-1|AAS77444.1|  306|Drosophila melanogaster AT29374p pro...    29   3.1  
AE013599-2084|AAM70978.1|  368|Drosophila melanogaster CG30466-P...    29   3.1  
AY061833-1|AAL27644.1|  998|Drosophila melanogaster SD07678p pro...    29   4.1  
AE014298-400|AAF45784.2|  998|Drosophila melanogaster CG32796-PB...    29   4.1  

>BT012319-1|AAS77444.1|  306|Drosophila melanogaster AT29374p
           protein.
          Length = 306

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 380 FHTFLQNDSEHDILGNYNLSILSFKCFCF 466
           FHT +QN + H++LG Y+ +   FK F F
Sbjct: 215 FHTLIQNLNTHEVLGIYHCT-FGFKEFTF 242


>AE013599-2084|AAM70978.1|  368|Drosophila melanogaster CG30466-PA
           protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 380 FHTFLQNDSEHDILGNYNLSILSFKCFCF 466
           FHT +QN + H++LG Y+ +   FK F F
Sbjct: 313 FHTLIQNLNTHEVLGIYHCT-FGFKEFTF 340


>AY061833-1|AAL27644.1|  998|Drosophila melanogaster SD07678p
           protein.
          Length = 998

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 64  PFDIKNSLQNICRLTMIRRPCGKCAGDEKPLLMDISSGRNKEKPQPN 204
           P D    L  + R T++R P      +  PLL+D S+  N   PQP+
Sbjct: 320 PIDHTIKLSVLQRPTILRGPAATLTNESNPLLLDCSASGN---PQPD 363


>AE014298-400|AAF45784.2|  998|Drosophila melanogaster CG32796-PB,
           isoform B protein.
          Length = 998

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 64  PFDIKNSLQNICRLTMIRRPCGKCAGDEKPLLMDISSGRNKEKPQPN 204
           P D    L  + R T++R P      +  PLL+D S+  N   PQP+
Sbjct: 320 PIDHTIKLSVLQRPTILRGPAATLTNESNPLLLDCSASGN---PQPD 363


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,778,746
Number of Sequences: 53049
Number of extensions: 402896
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)