Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24j11
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z49071-6|CAA88876.2|  292|Caenorhabditis elegans Hypothetical pr...    28   5.1  

>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
            protein C34F6.10 protein.
          Length = 1441

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 234  PYRIGNTSFNVKCLRLYHTNIVVKRFHLKHTLHIYRDPS 350
            P  + N  FNVKC  LY  + + K   L++T+HI + P+
Sbjct: 986  PSPVINAKFNVKCSTLY-WDCLDKSTDLQYTVHIRQLPT 1023


>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical protein
            C34F6.10 protein.
          Length = 1441

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 234  PYRIGNTSFNVKCLRLYHTNIVVKRFHLKHTLHIYRDPS 350
            P  + N  FNVKC  LY  + + K   L++T+HI + P+
Sbjct: 986  PSPVINAKFNVKCSTLY-WDCLDKSTDLQYTVHIRQLPT 1023


>Z49071-6|CAA88876.2|  292|Caenorhabditis elegans Hypothetical
           protein T22C8.4 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 131 FPHGRLIIVSLHIFCSEFLISNGKLIFFRFYYQYVFV 21
           FP     +V + + CS  L+++    FF+F  +YVF+
Sbjct: 8   FPSTFCSLVVVIVICSTSLLTHCTTAFFKFSLKYVFI 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,548,655
Number of Sequences: 27780
Number of extensions: 220457
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)