Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24j11
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   4.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.7  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   8.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.2  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 127 GKCAGDEKPLLMDISSGRNK 186
           G C+ DE+ L+ D+  G NK
Sbjct: 21  GLCSEDEERLVRDLFRGYNK 40


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 166 YPSAAVSHHQHISRMVV 116
           Y SAA +HH H  +  V
Sbjct: 91  YVSAAAAHHHHQQQQAV 107


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 246 GNTSFNVKCLRLYHTNIVVKRFHLKHTLHIYRDPS 350
           GN+  N            VK FH +  ++ Y DPS
Sbjct: 131 GNSRANTYNFDYPQVPYTVKNFHPRCAVNNYNDPS 165


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 446 TGYLNYSCPECRAR 405
           TG   + CPEC  R
Sbjct: 5   TGEKPFECPECHKR 18


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 168 NIHQQRFLITSTFPAWSSNHRESTYILQ*IFN 73
           +IH Q + IT  F        ++   LQ IFN
Sbjct: 5   HIHYQHYHITPVFTKQKKVKEDTELNLQTIFN 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,605
Number of Sequences: 438
Number of extensions: 2638
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)