Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24j05
(432 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 138 4e-34
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 54 9e-09
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 45 4e-06
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 2.8
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 3.8
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 5.0
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 6.6
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 25 6.6
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 25 6.6
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 24 8.7
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 24 8.7
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 138 bits (333), Expect = 4e-34
Identities = 71/144 (49%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Frame = +1
Query: 4 VLQRXLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXX 183
+L LKVPP I QF +TLDK TA +FK+L KYRPET
Sbjct: 64 ILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQ 123
Query: 184 XXXR-PNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 360
+ P ++ G N V L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K
Sbjct: 124 DVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNK 183
Query: 361 SRLGALVHRKTCTCLXLTNVESGD 432
+RLG ++H+KT L +T V D
Sbjct: 184 ARLGTVIHQKTAAVLAVTEVREED 207
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 54.0 bits (124), Expect = 9e-09
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +1
Query: 205 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 372
+R G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 45.2 bits (102), Expect = 4e-06
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +1
Query: 205 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 384
I G V K V K + LV++A D+ P++++ +P LC VPY K LG +
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113
Query: 385 RKTCT 399
K T
Sbjct: 114 TKRPT 118
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 2.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 226 LCLCRIGWC 200
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 208 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 330
+SG+ +T+ + +V I + +D +E LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +1
Query: 70 TAKGLFKILEKYR 108
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 6.6
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 180 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQXTL 10
L F L +S Q FP FS L+NL + ++ Q L + R T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 24.6 bits (51), Expect = 6.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 1 AVLQRXLKVPPPINQFTQTLDKTTAKGLFKILE 99
AVL LK P IN F + L + +F++LE
Sbjct: 464 AVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 24.6 bits (51), Expect = 6.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 207 PIRHKHSHQAGREEEGAACGHR 272
P HKH++ +EE +C HR
Sbjct: 151 PNGHKHTYAEMTDEERNSCSHR 172
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 309 ASVMP*NGCTILHCQGQIPPRGTCTSQDM 395
A+V+ N + HC IPP CT + +
Sbjct: 453 AAVLNLNSLKLWHCNEAIPPTLLCTCRQV 481
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 24.2 bits (50), Expect = 8.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 377 SAPRRDLPLTMQYGTPILRH 318
S P ++LP T++ T LRH
Sbjct: 777 SVPEQELPFTLEQATMDLRH 796
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,569,023
Number of Sequences: 5004
Number of extensions: 24622
Number of successful extensions: 77
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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