Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24j05
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 153 8e-38
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 126 6e-30
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 111 3e-25
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 51 5e-07
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 49 1e-06
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 48 2e-06
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 48 4e-06
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 35 0.032
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 35 0.032
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 27 4.9
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 27 6.5
01_01_1106 + 8750597-8754031 27 6.5
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896... 27 8.6
03_03_0006 - 13666961-13667755 27 8.6
01_01_0191 - 1669631-1669924 27 8.6
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 153 bits (370), Expect = 8e-38
Identities = 77/143 (53%), Positives = 97/143 (67%)
Frame = +1
Query: 4 VLQRXLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXX 183
+L++ LKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 62 ILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVE 121
Query: 184 XXXRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKS 363
+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+
Sbjct: 122 AK-KPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKA 180
Query: 364 RLGALVHRKTCTCLXLTNVESGD 432
RLG++VH+KT + L LT V++ D
Sbjct: 181 RLGSIVHKKTASVLCLTTVKNED 203
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 126 bits (305), Expect = 6e-30
Identities = 68/143 (47%), Positives = 93/143 (65%)
Frame = +1
Query: 4 VLQRXLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXX 183
VL++ LKVPP +NQFT+TLDK ++L++ + E
Sbjct: 63 VLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVEAK-------------- 108
Query: 184 XXXRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKS 363
+P ++ G + VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+
Sbjct: 109 ---KPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKA 165
Query: 364 RLGALVHRKTCTCLXLTNVESGD 432
RLG++VH+KT + L LT V++ D
Sbjct: 166 RLGSIVHKKTASVLCLTTVKNED 188
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 111 bits (266), Expect = 3e-25
Identities = 65/143 (45%), Positives = 83/143 (58%)
Frame = +1
Query: 4 VLQRXLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXX 183
+L++ LKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 46 ILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVE 105
Query: 184 XXXRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKS 363
+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM
Sbjct: 106 AK-KPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKM----------- 153
Query: 364 RLGALVHRKTCTCLXLTNVESGD 432
+VH+KT + L LT V++ D
Sbjct: 154 ---EIVHKKTASVLCLTTVKNED 173
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 50.8 bits (116), Expect = 5e-07
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 205 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 378
++ G N TK + + A+ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 92
Query: 379 VHRKTCTCLXLTNVES 426
V R C +N S
Sbjct: 93 VTRPVIACSVTSNEAS 108
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 49.2 bits (112), Expect = 1e-06
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 205 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 378
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 379 VHRKTCTCLXLTN 417
V R C +N
Sbjct: 95 VTRPVIACSVTSN 107
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 48.4 bits (110), Expect = 2e-06
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 205 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 378
++ G V K + + + L +IA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGT 104
Query: 379 VHRKTCTCLXLTNVESGD 432
R TC L LT G+
Sbjct: 105 TKRPTCCVLVLTKPAKGE 122
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 47.6 bits (108), Expect = 4e-06
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 205 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 378
++ G V K + + L VIA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGT 104
Query: 379 VHRKTCTCLXLTNVESGD 432
R TC L +T G+
Sbjct: 105 TKRPTCCVLVMTKPAKGE 122
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 34.7 bits (76), Expect = 0.032
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 214 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 372
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 34.7 bits (76), Expect = 0.032
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 214 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 372
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 168 QER*ASTKEAQHHPIRHKHSHQAGREEEGAACGHR 272
QER A + + H RH H H A + + GHR
Sbjct: 685 QER-ARRRHKRAHSHRHSHHHDAHKRHKTELAGHR 718
>07_03_0909 + 22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 214 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYC 345
G TV L++ KK +++ +AHD+ L P K+ + YC
Sbjct: 1040 GVFTVAGLLKFKKEEILQLAHDLCDEFQALGKPGDAAKIALEYC 1083
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 300 SLPASVMP*NGCTILHCQG----QIPPRGTCTSQDMHMLXSNKCGV 425
+LP+S+ +L+ +G +I P C+ Q++H L ++CGV
Sbjct: 532 TLPSSIGTLQSLHLLNLKGCGNLEILPDTICSLQNLHFLNLSRCGV 577
>09_04_0300 -
16488358-16488447,16488684-16489116,16489377-16489642,
16490015-16490044,16490282-16490606,16491752-16492035,
16492154-16492376,16493117-16493173,16494454-16494947
Length = 733
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 189 WWRLIFLGNLSFSSFPQ 139
WW L+FL N +SFPQ
Sbjct: 81 WWLLLFLYNAMPASFPQ 97
>03_03_0006 - 13666961-13667755
Length = 264
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 201 HHPIRHKHSHQAGREEEGAA 260
HH +RH+H H R G A
Sbjct: 100 HHRVRHRHRHHRDRGRRGHA 119
>01_01_0191 - 1669631-1669924
Length = 97
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 86 KRPLAVVLSSVWVNWLIGGG 27
+R LA++L W WL GGG
Sbjct: 12 RRRLALILCLAWALWLHGGG 31
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,239,799
Number of Sequences: 37544
Number of extensions: 190057
Number of successful extensions: 558
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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