Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24j05
(432 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 148 1e-36
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 136 5e-33
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 4e-08
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 54 6e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 44 5e-05
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.013
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 33 0.088
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 3.3
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 148 bits (359), Expect = 1e-36
Identities = 71/144 (49%), Positives = 92/144 (63%)
Frame = +1
Query: 1 AVLQRXLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXX 180
A+LQ+ LKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 69 AILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKE 128
Query: 181 XXXXRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 360
RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK
Sbjct: 129 EVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGK 188
Query: 361 SRLGALVHRKTCTCLXLTNVESGD 432
+ LG +V RKT + L +V D
Sbjct: 189 ASLGTVVRRKTTAAVALVDVNPED 212
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 136 bits (330), Expect = 5e-33
Identities = 71/144 (49%), Positives = 92/144 (63%)
Frame = +1
Query: 1 AVLQRXLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXX 180
A+LQ+ LKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 69 AILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEVTK---------------- 112
Query: 181 XXXXRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 360
RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK
Sbjct: 113 ----RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGK 168
Query: 361 SRLGALVHRKTCTCLXLTNVESGD 432
+ LG +V RKT + L +V D
Sbjct: 169 ASLGTVVRRKTTAAVALVDVNPED 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.0 bits (124), Expect = 4e-08
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +1
Query: 205 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 372
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 53.6 bits (123), Expect = 6e-08
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +1
Query: 1 AVLQRXLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 117
A+LQ+ LKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 172 AILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 44.0 bits (99), Expect = 5e-05
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 202 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-AL 378
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG A+
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 379 VHRK 390
HR+
Sbjct: 128 GHRR 131
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.013
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -1
Query: 159 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 40
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 33.1 bits (72), Expect = 0.088
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 1 AVLQRXLKVPPPINQFTQTLD 63
A+LQ+ LKVPP INQF LD
Sbjct: 172 AILQKRLKVPPTINQFRTALD 192
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 32 LRSTNLPRHWTRLQLRA 82
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,108,064
Number of Sequences: 27780
Number of extensions: 153337
Number of successful extensions: 322
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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