Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24j05
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 375 CPEAGFALDNAVW 337
           CP AG+ +++ VW
Sbjct: 512 CPVAGYPIESIVW 524


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 183 STKEAQHHPIRHKHSH 230
           ST    HH + H HSH
Sbjct: 410 STPGPHHHTMGHGHSH 425


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 378 KCPEAGFALDNAVW 337
           KCP AG+ ++   W
Sbjct: 539 KCPVAGYPIEEIKW 552


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 378 KCPEAGFALDNAVW 337
           KCP AG+ ++   W
Sbjct: 539 KCPVAGYPIEEIKW 552


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 153 SSFPQPLFPGCFSLRPVFLQ 94
           + FPQ  FP C   R  FL+
Sbjct: 145 AKFPQEFFPECKWSRKGFLR 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,945
Number of Sequences: 438
Number of extensions: 1941
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)