Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24j04
(264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 27 0.43
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 2.3
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 25 2.3
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 24 4.0
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 24 4.0
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 24 4.0
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 24 4.0
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 24 4.0
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ... 23 5.3
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 23 5.3
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 23 7.0
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 23 7.0
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 23 7.0
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 23 7.0
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 23 7.0
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 23 9.2
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 23 9.2
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 23 9.2
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 0.43
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -2
Query: 224 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 96
A GT++ +IST +P P++VSGH A R+P+ S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 2.3
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -2
Query: 161 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 18
P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 617 PLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 24.6 bits (51), Expect = 2.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 80 PWNPIEGRYGSEREEHRI 133
P+ P+EG Y + ++ HRI
Sbjct: 3 PYEPVEGLYVNAKQYHRI 20
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 23.8 bits (49), Expect = 4.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 180 SPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFP 43
SPE ++++ R P ++ S PS+ F TL R P
Sbjct: 166 SPESKQTSDGHRPPSPTSITTTSTSIDPSVAFSSKSTLATTRTNAP 211
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 23.8 bits (49), Expect = 4.0
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 75 EFHGIL*KGDMVRNAKST 128
E+HG+ +G +VRNA ++
Sbjct: 69 EYHGVQARGQLVRNADNS 86
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 23.8 bits (49), Expect = 4.0
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -1
Query: 225 CGYGYEPARHLHVHPSPEFSRSAESIRTPP 136
C Y E RH H P E + + I T P
Sbjct: 1217 CDYRVEVPRHSHRPPLIELQKMVDDIPTLP 1246
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 23.8 bits (49), Expect = 4.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 41 SGKSFLFCLSVRVPWNPIEGRYGSERE 121
+G LFCLS+ WN +Y R+
Sbjct: 478 AGSLQLFCLSIIKRWNQTGQKYSDLRD 504
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 23.8 bits (49), Expect = 4.0
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -1
Query: 96 SIGFHGTRTLRQKRKLFPDLSAASSGHF 13
++ GTR L+ K PD+ ++ G +
Sbjct: 8 NVNIQGTRVLKNKLGKIPDIDISTDGKY 35
>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 201
Score = 23.4 bits (48), Expect = 5.3
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 125 HRICGGVRILSADLENSGEGCTWRC 199
H I G + + EGC WRC
Sbjct: 44 HEIPGSTGVFATMPRPPLEGCRWRC 68
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 23.4 bits (48), Expect = 5.3
Identities = 14/47 (29%), Positives = 16/47 (34%)
Frame = -1
Query: 225 CGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGF 85
C Y LH P P F SI + + CS S P F
Sbjct: 85 CRDCYAKQAFLHPCPKPHFVLVRSSIPSVASLTCSVNSMSVSPQSNF 131
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 23.0 bits (47), Expect = 7.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 120 KSTAFAAVSGYSLRTLKIQVRDVRGDV 200
K+ AVSG +RTL IQ++ + DV
Sbjct: 407 KTPIRTAVSGNLVRTLLIQLQKTKVDV 433
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 23.0 bits (47), Expect = 7.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 236 WRPAA-DMGTNRRDISTYIPHLNFQGPQR 153
W+ + D GT+R D+S P NF QR
Sbjct: 124 WKASKHDDGTHRVDLSQRKPANNFMATQR 152
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 23.0 bits (47), Expect = 7.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 180 SPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFH 82
+P S + ES+ TPPQ + +P++ H
Sbjct: 208 APVPSAAEESVSTPPQPAVAPSVSAVVPNLPVH 240
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 23.0 bits (47), Expect = 7.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 137 RKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQATL 12
+K + +P HI LL + E + + +++ + SRRR L
Sbjct: 1037 QKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNL 1078
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 23.0 bits (47), Expect = 7.0
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -2
Query: 245 SSPWRPAADMGT---NRRDISTYIPHLNFQGPQRVSGHRRKCG 126
SSP D G+ R+ + TYI ++ P+ + G CG
Sbjct: 269 SSPIVKVIDFGSACHERQTVYTYIQSRFYRSPEVILGLHYNCG 311
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 22.6 bits (46), Expect = 9.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 219 YGYEPARHLHVHPSPEFSRSAESIRTPPQ 133
+G E R + +P FS S + TPPQ
Sbjct: 291 FGQERFRISEILFNPSFSASRSAETTPPQ 319
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 22.6 bits (46), Expect = 9.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 183 PSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRK 52
PSP S S+E TP + +S+ P + + RTL+ K
Sbjct: 88 PSPAESESSERRHTP---QTNSQKSQKTPRLSSNKRRTLKNDAK 128
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 22.6 bits (46), Expect = 9.2
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 179 HLNFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 27
HL+ P R R+K L L DS E+ERS + N S +R
Sbjct: 23 HLDSCFPLRYIIGRKKASKLLCTMDSGLKSDSHEVERSNFQLNKPEKSLKR 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,126,845
Number of Sequences: 5004
Number of extensions: 20730
Number of successful extensions: 60
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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