Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24j04
(264 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC093754-1|AAH93754.1| 587|Homo sapiens hypothetical protein LO... 31 0.88
BC093752-1|AAH93752.1| 587|Homo sapiens hypothetical protein LO... 31 0.88
AF131737-1|AAD20026.1| 587|Homo sapiens Unknown protein. 31 0.88
AC079353-1|AAY24034.1| 423|Homo sapiens unknown protein. 31 0.88
DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated... 30 1.5
AK127686-1|BAC87084.1| 401|Homo sapiens protein ( Homo sapiens ... 30 1.5
AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens ... 30 1.5
AK057456-1|BAB71495.1| 166|Homo sapiens protein ( Homo sapiens ... 28 4.7
AF169196-1|AAG43399.1| 303|Homo sapiens tight junction protein ... 28 4.7
U08998-1|AAB50581.2| 366|Homo sapiens TAR RNA binding protein 2... 28 6.2
M60801-1|AAA36765.1| 345|Homo sapiens TAR RNA binding protein p... 28 6.2
AB209476-1|BAD92713.1| 1264|Homo sapiens importin 4 variant prot... 28 6.2
BC129999-1|AAI30000.1| 216|Homo sapiens LOC730112 protein protein. 27 8.2
BC114371-1|AAI14372.1| 714|Homo sapiens FERM domain containing ... 27 8.2
AL109749-2|CAI42080.1| 594|Homo sapiens novel protein protein. 27 8.2
AK125336-1|BAC86135.1| 714|Homo sapiens protein ( Homo sapiens ... 27 8.2
AB053315-1|BAB69023.1| 191|Homo sapiens ALS2CR13 protein. 27 8.2
>BC093754-1|AAH93754.1| 587|Homo sapiens hypothetical protein
LOC51057 protein.
Length = 587
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 68 SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 199
SVR W+P++ R+G+ ++ +++ +S D E + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162
>BC093752-1|AAH93752.1| 587|Homo sapiens hypothetical protein
LOC51057 protein.
Length = 587
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 68 SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 199
SVR W+P++ R+G+ ++ +++ +S D E + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162
>AF131737-1|AAD20026.1| 587|Homo sapiens Unknown protein.
Length = 587
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 68 SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 199
SVR W+P++ R+G+ ++ +++ +S D E + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162
>AC079353-1|AAY24034.1| 423|Homo sapiens unknown protein.
Length = 423
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 68 SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 199
SVR W+P++ R+G+ ++ +++ +S D E + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162
>DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated
protein protein.
Length = 5005
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -1
Query: 231 TCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRK 52
T YG + + V S + SRS E++ P+ R S S PY PS + + Q R
Sbjct: 1325 TAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSA---DSNSFHQYRS 1381
Query: 51 LFPDLSAASS 22
+ +S A S
Sbjct: 1382 MDSSMSMADS 1391
>AK127686-1|BAC87084.1| 401|Homo sapiens protein ( Homo sapiens
cDNA FLJ45784 fis, clone NETRP2006468. ).
Length = 401
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -1
Query: 231 TCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRK 52
T YG + + V S + SRS E++ P+ R S S PY PS + + Q R
Sbjct: 311 TAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSA---DSNSFHQYRS 367
Query: 51 LFPDLSAASS 22
+ +S A S
Sbjct: 368 MDSSMSMADS 377
>AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens cDNA
FLJ42912 fis, clone BRHIP3024533. ).
Length = 1168
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -1
Query: 231 TCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRK 52
T YG + + V S + SRS E++ P+ R S S PY PS + + Q R
Sbjct: 1078 TAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSA---DSNSFHQYRS 1134
Query: 51 LFPDLSAASS 22
+ +S A S
Sbjct: 1135 MDSSMSMADS 1144
>AK057456-1|BAB71495.1| 166|Homo sapiens protein ( Homo sapiens
cDNA FLJ32894 fis, clone TESTI2004994. ).
Length = 166
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 115 FRTISPFYRIPWNSNAQAEKKTLPGP 38
F + SP +R+PW S A A LP P
Sbjct: 105 FFSSSPSHRVPWGSCASASAPRLPVP 130
>AF169196-1|AAG43399.1| 303|Homo sapiens tight junction protein
ZO-1 protein.
Length = 303
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -1
Query: 183 PSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPD 40
PSP +S A+S+RTP PS+ H T ++ +P+
Sbjct: 120 PSPSYSPQADSLRTPSTEAAHIMLRDQEPSLSSHVDPTKVYRKDPYPE 167
>U08998-1|AAB50581.2| 366|Homo sapiens TAR RNA binding protein 2
protein.
Length = 366
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 71 VRVPWNPIEGRYGSERE--EHRICGGVRILSADLENSGEGCTW 193
+RV P++ R G+E E + GV L N G GCTW
Sbjct: 223 LRVHTVPLDARDGNEVEPDDDHFSIGVGFRLDGLRNRGPGCTW 265
>M60801-1|AAA36765.1| 345|Homo sapiens TAR RNA binding protein
protein.
Length = 345
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 71 VRVPWNPIEGRYGSERE--EHRICGGVRILSADLENSGEGCTW 193
+RV P++ R G+E E + GV L N G GCTW
Sbjct: 202 LRVHTVPLDARDGNEVEPDDDHFSIGVGFRLDGLRNRGPGCTW 244
>AB209476-1|BAD92713.1| 1264|Homo sapiens importin 4 variant
protein.
Length = 1264
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 177 PEFSRSAESIRTPPQMRCSSRSEPYLPSIGF 85
P + +A S +P Q+ S R EP LP GF
Sbjct: 89 PSWPLNARSSSSPTQLGNSRRGEPTLPESGF 119
>BC129999-1|AAI30000.1| 216|Homo sapiens LOC730112 protein protein.
Length = 216
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 194 STYIPHLNFQGPQRVSGHRRKCGALR 117
ST+IP LN Q P + G+ C LR
Sbjct: 5 STFIPGLNPQNPHYIPGYTGHCPLLR 30
>BC114371-1|AAI14372.1| 714|Homo sapiens FERM domain containing 7
protein.
Length = 714
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 85 PWNSNAQAEKKTLPGPLGGVFRPLWVTP 2
P S +Q++ KT+ P G FRPL P
Sbjct: 587 PKRSQSQSDMKTIRFPFGSEFRPLGPCP 614
>AL109749-2|CAI42080.1| 594|Homo sapiens novel protein protein.
Length = 594
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 85 PWNSNAQAEKKTLPGPLGGVFRPLWVTP 2
P S +Q++ KT+ P G FRPL P
Sbjct: 467 PKRSQSQSDMKTIRFPFGSEFRPLGPCP 494
>AK125336-1|BAC86135.1| 714|Homo sapiens protein ( Homo sapiens
cDNA FLJ43346 fis, clone NT2RI3008652, moderately
similar to Homo sapiens mRNA for CDEP. ).
Length = 714
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 85 PWNSNAQAEKKTLPGPLGGVFRPLWVTP 2
P S +Q++ KT+ P G FRPL P
Sbjct: 587 PKRSQSQSDMKTIRFPFGSEFRPLGPCP 614
>AB053315-1|BAB69023.1| 191|Homo sapiens ALS2CR13 protein.
Length = 191
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 207 PARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPS 94
PAR H SPE SRS+ R+P C + + PS
Sbjct: 73 PARVRHRRRSPEQSRSSPEKRSPSAPVCKAGDKTRQPS 110
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,239,902
Number of Sequences: 237096
Number of extensions: 849191
Number of successful extensions: 3003
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3003
length of database: 76,859,062
effective HSP length: 65
effective length of database: 61,447,822
effective search space used: 1351852084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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