Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24j04
(264 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 1.4
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 1.4
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical pr... 26 3.2
AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative acti... 26 3.2
AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched relat... 26 3.2
Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z29967-2|CAA82855.1| 722|Caenorhabditis elegans lin-15A protein. 26 4.2
U40798-4|AAA81474.2| 430|Caenorhabditis elegans Hypothetical pr... 26 4.2
U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein... 26 4.2
U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein... 26 4.2
AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 26 4.2
AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear horm... 26 4.2
AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 26 4.2
U23449-3|AAC24301.1| 579|Caenorhabditis elegans Nuclear hormone... 25 5.6
AF273773-1|AAG15122.1| 555|Caenorhabditis elegans nuclear recep... 25 5.6
AF273772-1|AAG15121.1| 443|Caenorhabditis elegans nuclear recep... 25 5.6
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 25 7.4
Z79755-2|CAB02107.1| 294|Caenorhabditis elegans Hypothetical pr... 25 9.8
U80450-2|AAK77614.1| 252|Caenorhabditis elegans Hypothetical pr... 25 9.8
U80450-1|AAK77613.1| 244|Caenorhabditis elegans Hypothetical pr... 25 9.8
U70853-2|AAM97995.1| 228|Caenorhabditis elegans Hypothetical pr... 25 9.8
U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical pr... 25 9.8
U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase ... 25 9.8
L23645-7|AAK26132.2| 157|Caenorhabditis elegans Hypothetical pr... 25 9.8
AL132948-6|CAC51070.1| 395|Caenorhabditis elegans Hypothetical ... 25 9.8
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -3
Query: 166 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 38
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 150 IRTPPQMRCSSRSEPYLPSIGFHGT 76
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 171 FSRSAESIRTPPQMRCSSRSEP--YLPSIGFHGTRT 70
FS S E+ T Q R + S P YLPSIG + T T
Sbjct: 11 FSASNENNETIKQGRDADSSSPSEYLPSIGHYFTHT 46
>Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical
protein F09B9.2b protein.
Length = 639
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 186 HPSPEFSRSAESIRTPPQMRCSSRSEP-YLPSIGFH 82
HPS E +R+ E+I + SR+EP Y + G H
Sbjct: 238 HPSCEHARTTENIAPTGRAATLSRNEPKYQSTFGQH 273
>Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical
protein F09B9.2a protein.
Length = 625
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 186 HPSPEFSRSAESIRTPPQMRCSSRSEP-YLPSIGFH 82
HPS E +R+ E+I + SR+EP Y + G H
Sbjct: 224 HPSCEHARTTENIAPTGRAATLSRNEPKYQSTFGQH 259
>AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative
actin-binding proteinUNC-115 protein.
Length = 639
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 186 HPSPEFSRSAESIRTPPQMRCSSRSEP-YLPSIGFH 82
HPS E +R+ E+I + SR+EP Y + G H
Sbjct: 238 HPSCEHARTTENIAPTGRAATLSRNEPKYQSTFGQH 273
>AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched related
family protein 4 protein.
Length = 960
Score = 26.2 bits (55), Expect = 3.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 131 ICGGVRILSADLENSGEGC 187
+CGG+ +L +DL++ GC
Sbjct: 825 VCGGLALLGSDLDSVSMGC 843
>Z79605-1|CAB01904.1| 719|Caenorhabditis elegans Hypothetical
protein ZK678.1 protein.
Length = 719
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -3
Query: 79 NSNAQAEKKTLP 44
NSN QAEKKT+P
Sbjct: 95 NSNVQAEKKTIP 106
>Z29967-2|CAA82855.1| 722|Caenorhabditis elegans lin-15A protein.
Length = 722
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -3
Query: 79 NSNAQAEKKTLP 44
NSN QAEKKT+P
Sbjct: 95 NSNVQAEKKTIP 106
>U40798-4|AAA81474.2| 430|Caenorhabditis elegans Hypothetical
protein R13A1.3 protein.
Length = 430
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 86 NPIEGRYGSEREEHRICGGVRILSADLENSGEGCT 190
N I+GR+ + EE +C + +L+ +GEG T
Sbjct: 47 NTIQGRFEIKCEEDSMCRWKFLAQVELQFTGEGQT 81
>U10413-2|AAA20090.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -3
Query: 79 NSNAQAEKKTLP 44
NSN QAEKKT+P
Sbjct: 95 NSNVQAEKKTIP 106
>U10411-1|AAA20087.1| 719|Caenorhabditis elegans lin-15A protein
protein.
Length = 719
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -3
Query: 79 NSNAQAEKKTLP 44
NSN QAEKKT+P
Sbjct: 95 NSNVQAEKKTIP 106
>AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor
NHR-8 protein.
Length = 560
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 146 RILSADLENSGEGCTWRCRAGSYPYPQQ 229
++++ E S + CT +C+ G YP Q+
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQR 176
>AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform b protein.
Length = 559
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 146 RILSADLENSGEGCTWRCRAGSYPYPQQ 229
++++ E S + CT +C+ G YP Q+
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQR 176
>AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform a protein.
Length = 560
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 146 RILSADLENSGEGCTWRCRAGSYPYPQQ 229
++++ E S + CT +C+ G YP Q+
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQR 176
>U23449-3|AAC24301.1| 579|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 22 protein.
Length = 579
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 192 HVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG--FHGTRTLRQKRKLFPDLSAASSG 19
++ P P S+ + TPP + S+ S P+ G H R L D+ AS+
Sbjct: 232 YLSPDPSSSQPLDMTVTPPPLHRSTPSILLTPATGDRMHCQRVLSNSPPF--DIHQASTS 289
Query: 18 HFG 10
H G
Sbjct: 290 HAG 292
>AF273773-1|AAG15122.1| 555|Caenorhabditis elegans nuclear receptor
NHR-22 protein.
Length = 555
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 192 HVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG--FHGTRTLRQKRKLFPDLSAASSG 19
++ P P S+ + TPP + S+ S P+ G H R L D+ AS+
Sbjct: 208 YLSPDPSSSQPLDMTVTPPPLHRSTPSILLTPATGDRMHCQRVLSNSPPF--DIHQASTS 265
Query: 18 HFG 10
H G
Sbjct: 266 HAG 268
>AF273772-1|AAG15121.1| 443|Caenorhabditis elegans nuclear receptor
NHR-22 protein.
Length = 443
Score = 25.4 bits (53), Expect = 5.6
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 192 HVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIG--FHGTRTLRQKRKLFPDLSAASSG 19
++ P P S+ + TPP + S+ S P+ G H R L D+ AS+
Sbjct: 96 YLSPDPSSSQPLDMTVTPPPLHRSTPSILLTPATGDRMHCQRVLSNSPPF--DIHQASTS 153
Query: 18 HFG 10
H G
Sbjct: 154 HAG 156
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -1
Query: 207 PARHLHVHPSPEFSRSAESIRTP 139
P H H HP P+ + E + +P
Sbjct: 228 PPHHHHHHPMPKIHENPEQVASP 250
>Z79755-2|CAB02107.1| 294|Caenorhabditis elegans Hypothetical
protein F43G9.3 protein.
Length = 294
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 132 FAAVSGYSLRTLKIQVRDVRGDV 200
+A S ++ TLKI RD RG+V
Sbjct: 179 YAGSSFFTYETLKIMYRDHRGEV 201
>U80450-2|AAK77614.1| 252|Caenorhabditis elegans Hypothetical
protein M01E11.4b protein.
Length = 252
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 107 GSEREEHRICGGVRILS 157
GS +E +CGG R+LS
Sbjct: 133 GSHKEVVEVCGGFRVLS 149
>U80450-1|AAK77613.1| 244|Caenorhabditis elegans Hypothetical
protein M01E11.4a protein.
Length = 244
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 107 GSEREEHRICGGVRILS 157
GS +E +CGG R+LS
Sbjct: 125 GSHKEVVEVCGGFRVLS 141
>U70853-2|AAM97995.1| 228|Caenorhabditis elegans Hypothetical
protein M01H9.5 protein.
Length = 228
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 99 PSIGFHGTRTLRQKRKLFPDLSA 31
PS+ F +T+R+ +LFP LSA
Sbjct: 20 PSLFFPSEQTVRKSVELFPRLSA 42
>U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical
protein T12E12.3 protein.
Length = 818
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -2
Query: 239 PWRPAADMGTNRRDISTYIPHL-NFQGPQRV 150
PWRP G R S+ + HL N Q P +
Sbjct: 282 PWRPRTPAGHRDRSPSSPMAHLDNIQPPSPI 312
>U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase c
protein 2, isoformc protein.
Length = 936
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 127 VLFAFRTISPFYRIPWNSNAQAEKKTLPGPL 35
VLF F + PF +P+ S+ Q + PL
Sbjct: 827 VLFIFLILRPFLLLPYLSHLQLTLSAIHSPL 857
>L23645-7|AAK26132.2| 157|Caenorhabditis elegans Hypothetical
protein F54F2.7 protein.
Length = 157
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +2
Query: 101 RYGSEREEHRICGGVRILSADLENSGEGCTWRCRAGS 211
++G++R +++ G + + L+ + CT++C+ GS
Sbjct: 57 KHGADRSTNQVSGKGKKGALILQPDSKLCTFKCKDGS 93
>AL132948-6|CAC51070.1| 395|Caenorhabditis elegans Hypothetical
protein Y39B6A.7 protein.
Length = 395
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 5 GNP-KWPEDAAERSGKSFLFCLSVRV 79
G+P KW +D+ RS K+F + +S ++
Sbjct: 155 GSPAKWLDDSCYRSSKAFPYLVSQKI 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,382,486
Number of Sequences: 27780
Number of extensions: 122811
Number of successful extensions: 502
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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