Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24i24
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    27   2.8  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   2.8  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.4  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    25   6.4  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    25   8.5  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   8.5  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   8.5  

>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 517 GITEEKFLQQLEIEEQFGVTIEE 585
           G+T+ K L QL  EE FG  +E+
Sbjct: 724 GLTQVKLLSQLSREESFGPLVEK 746


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 222 PLSSSTIIHDHSTYHTLLFSCLVPH 148
           PLS S ++ +H  + TL  +C++ H
Sbjct: 421 PLSHSKLLLEHRPFQTLAEACIIKH 445


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/70 (21%), Positives = 29/70 (41%)
 Frame = +1

Query: 256 PTQFLQLHGRPCKIHLDPTIAAAGEGPAIMMPWQGDPSNMIDRFDVRAHLDCIPEIKYPY 435
           P +      R  K H  P++++A +  A       +PSN+    DV+ +++       P 
Sbjct: 339 PNENAHESSRSKKKHTGPSLSSASQPSAASSSSSSEPSNLDKINDVKKNIEVSANEPQPR 398

Query: 436 VPPEDLSSEE 465
              ED+   +
Sbjct: 399 PVKEDVPKSQ 408


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 402 MSSHIKSINHIARVTLPWHHYSWTFSSSSNCRI 304
           +SS  K I  +A  TLPW  Y+W+    S  +I
Sbjct: 304 LSSSSKYIFWLAIATLPW--YNWSILEKSKIKI 334


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 214 LFYDNPRSFHVSYALVFLPRAT*SPINSVINKCDDYINFITSF 86
           L Y +P SF     LVFL     S  + V     D  NF+ S+
Sbjct: 52  LLYLHPVSFSAILLLVFLTMMPISMTHDVTTNLKDLQNFMASY 94


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 502 VQESYNAHNCIVFLLNLNPLEAHRDI*FLVCSLNE 398
           V +S N H   +   + N L+ H+D+  ++C L++
Sbjct: 582 VVKSLNFHATSLLRSSRNTLDLHKDVLIVLCQLSQ 616


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 298 HLDPTIAAAGEGPAIMMPWQGDPSNMIDRFDVR 396
           H D   A   E P + + + GD S +I R D+R
Sbjct: 257 HSDSVWALYSEHPDLKVFYAGDRSGLITRTDIR 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,385
Number of Sequences: 5004
Number of extensions: 48318
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)