Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24i24
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0248 + 15819264-15819460,15820691-15820729,15820797-158209...    89   2e-18
05_06_0096 + 25513535-25514024,25514139-25514236,25514395-255147...    28   5.0  
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559...    28   6.6  
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10...    27   8.7  
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815...    27   8.7  

>03_03_0248 +
           15819264-15819460,15820691-15820729,15820797-15820936,
           15821150-15821225,15822866-15823160,15823236-15823342,
           15823442-15823489,15823568-15823853,15823954-15823961,
           15824083-15824184,15824426-15824553,15824664-15824741,
           15825047-15825145,15825247-15825302
          Length = 552

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
 Frame = +1

Query: 148 MWHEARKQERMIRGMIVDYRRRAERRKDFYEKIKAEPTQFLQLHGRPCKIHLDPTIAAAG 327
           MWHEARK ER +  ++   RRRA+RR  +  + + +P Q LQ+ G  C++H D  +  A 
Sbjct: 1   MWHEARKSERKVHDLMDAARRRAQRRAAYLARRRGDPHQSLQVSGARCRVHRDDALYQAT 60

Query: 328 EGPAIMMPWQGDPSNMIDRFDVRAHLDCIPEIKYPYVPPEDLSSEERQ----CNYERYRI 495
           E    ++PW G    +IDRFD RA LD I +        ++ S EE +     N+ERYR 
Sbjct: 61  EDQQGLIPWNGKQDVLIDRFDGRALLDFIRDSSSRPFRVQEKSEEEEELEEFVNFERYRD 120

Query: 496 LAQNVFLGITEEKFLQQLEIE 558
           L ++    +++E  LQ +  E
Sbjct: 121 LIKH---RLSDEAGLQHVSQE 138


>05_06_0096 +
           25513535-25514024,25514139-25514236,25514395-25514783,
           25515485-25515599,25515816-25515917,25516584-25516734,
           25517162-25517250,25517518-25517566,25517723-25517763,
           25517929-25518116,25518285-25518402,25518900-25519079,
           25519172-25519294,25519368-25519455,25519549-25519679,
           25519768-25519866,25520822-25521253
          Length = 960

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -1

Query: 504 LCKNPITLIIALSFF*T*ILWRHIGIFNFWYAV*MSSHIKSINHIARVTLPWH-HYSWTF 328
           LC++  T +I LS     +L  + G FN W A      ++  N     T+P H +  W  
Sbjct: 649 LCEDEHTTVIVLSGSDRSVLDENFGEFNMWLAAEHGMFLRPTNGEWMTTMPEHLNMDWVD 708

Query: 327 S 325
           S
Sbjct: 709 S 709


>01_06_0293 -
           28254673-28254878,28255189-28255306,28255767-28255961,
           28256701-28256800,28256887-28256972,28257078-28257239,
           28257965-28258101,28258233-28258281,28258688-28258746,
           28258862-28258896,28259384-28259433,28260173-28260332,
           28260898-28260963,28261065-28261162,28261649-28261696,
           28262114-28262242,28262667-28262769,28262858-28262954,
           28263181-28263241,28263659-28263740,28263845-28263962,
           28264039-28266325
          Length = 1481

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +2

Query: 158 RQENKSV*YVE*SWIIVEELSGVRISTKKSKQ------SQHSFYSYMEGHVKYI 301
           R  NK+V +V   W+   +  G  + TK S +      S+HS Y+ +  +VK++
Sbjct: 316 RGYNKAVGFVPTGWMYETKKEGFAVRTKDSLEIHLVPYSEHSSYNELRDYVKFL 369


>12_01_0014 +
           105422-105520,105598-105725,105939-106101,106198-106310,
           106787-106825,107026-107109,107193-107241,107331-107422,
           107680-107809,107906-107982,108058-109676,110024-110221,
           110287-110825
          Length = 1109

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 593 NSFSSIVTPNCSSISSCWRNFSSVIPRKT 507
           NSFSS  T + + + S W + +S +P+ T
Sbjct: 355 NSFSSSSTVSSTKLPSSWNDDTSTVPKMT 383


>01_06_0381 +
           28878811-28879120,28880189-28880331,28880753-28881532,
           28882568-28883968
          Length = 877

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 304 DPTIAAAGEGPAIMMPWQ--GDPSNMIDRFDVRAHLDCIP 417
           DPT      G +++ PW   G    ++DR DVR  LD +P
Sbjct: 16  DPTAEVVNSGGSLV-PWAAVGADDLLLDRHDVRHLLDRVP 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,679,389
Number of Sequences: 37544
Number of extensions: 284108
Number of successful extensions: 685
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)