Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24i24
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...   121   5e-28
U32305-10|AAM75378.1|  749|Caenorhabditis elegans Splicing facto...    33   0.21 
U32305-9|AAM75380.1|  751|Caenorhabditis elegans Splicing factor...    33   0.21 
U06932-1|AAA64937.1|  749|Caenorhabditis elegans CeSWAP protein.       33   0.21 
Z81531-7|CAB04320.1|  722|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U06933-1|AAA64938.1|  551|Caenorhabditis elegans CeSWAP protein.       30   1.5  
Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score =  121 bits (291), Expect = 5e-28
 Identities = 55/143 (38%), Positives = 93/143 (65%), Gaps = 5/143 (3%)
 Frame = +1

Query: 148 MWHEARKQERMIRGMIVDYRRRAERRKDFYEKIKAEPTQFLQLHGRPCKIHLDPTIAAAG 327
           MWHEAR+QE+++R  ++D  +RAER++ ++E ++ +P QF+Q+HGR  +IH D  IA A 
Sbjct: 1   MWHEARRQEKILRTTMIDQSKRAERKRRYFENVRKDPDQFMQIHGRKAQIHADLGIARAA 60

Query: 328 EGPAIMMPWQGDPSNMIDRFDVRAHLDCIPEIKYPYVPPE---DLSSEERQ--CNYERYR 492
           E   I+ PWQGD +  IDRFD R+HL  +  +    + P+   ++  E+ Q   ++ERYR
Sbjct: 61  EDANILRPWQGDSTITIDRFDARSHLSKMDLVDIDEIIPKTKTEIVDEKEQIVTDFERYR 120

Query: 493 ILAQNVFLGITEEKFLQQLEIEE 561
           +L  N +  ++E+ +L+++   E
Sbjct: 121 VLIINDYKKVSEKHYLKKIADRE 143


>U32305-10|AAM75378.1|  749|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           a protein.
          Length = 749

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +1

Query: 346 MPWQGDPSNMIDRFDVRAHLDCIP-EIKYPYVPPEDL---SSEERQCNYERY 489
           +P  GDP N +DR+D R  L  I   IK    P E     + EE  C  ERY
Sbjct: 44  VPCLGDPENRVDRYDCRLLLPSIDVAIKRNGSPSEQCPTEAMEEDMCEEERY 95


>U32305-9|AAM75380.1|  751|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           d protein.
          Length = 751

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +1

Query: 346 MPWQGDPSNMIDRFDVRAHLDCIP-EIKYPYVPPEDL---SSEERQCNYERY 489
           +P  GDP N +DR+D R  L  I   IK    P E     + EE  C  ERY
Sbjct: 48  VPCLGDPENRVDRYDCRLLLPSIDVAIKRNGSPSEQCPTEAMEEDMCEEERY 99


>U06932-1|AAA64937.1|  749|Caenorhabditis elegans CeSWAP protein.
          Length = 749

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +1

Query: 346 MPWQGDPSNMIDRFDVRAHLDCIP-EIKYPYVPPEDL---SSEERQCNYERY 489
           +P  GDP N +DR+D R  L  I   IK    P E     + EE  C  ERY
Sbjct: 44  VPCLGDPENRVDRYDCRLLLPSIDVAIKRNGSPSEQCPTEAMEEDMCEEERY 95


>Z81531-7|CAB04320.1|  722|Caenorhabditis elegans Hypothetical
           protein F36D3.8 protein.
          Length = 722

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
 Frame = +1

Query: 343 MMPWQGDPSNMIDRFDVRAHLDCIPEIKYPYVPPEDLS---SEERQCNYERYRILAQNVF 513
           +M W GD   +  R D+    D  PE +   +  +D +   +  + C ++  +   Q +F
Sbjct: 418 LMKWHGDERPVFKREDIYRWSDSFPEYRLRMICLKDTTRVIAVGQYCYFDALKEGEQPLF 477

Query: 514 ---LGITEEKFLQQLEIEEQFGVTIEEKE 591
              LG T+ ++  +  +E Q  + +EE++
Sbjct: 478 FLGLGWTDPEYRNRAVMELQASMALEERD 506


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical
           protein K10C2.1 protein.
          Length = 2314

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -3

Query: 304 PNVFYMAFHVAVKTVLALL*FFRRNP-YAAQLFYDNPRSFHVSYALVFLPRAT*SPINSV 128
           P++ Y     A    LAL+ FF+R P Y  + FY        SY  V++P  T   +  +
Sbjct: 137 PDLLYNDDKTATDNALALVQFFQRFPEYQGRDFYITGE----SYGGVYVPTLTKLVVQMI 192

Query: 127 INKCDDYIN 101
            N    YIN
Sbjct: 193 QNNTTPYIN 201



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 304  PNVFYMAFHVAVKTVLALL*FFRRNP-YAAQLFYDNPRSFHVSYALVFLPRAT*SPINSV 128
            P+  Y   + A  TVLAL  FF + P Y  + FY        SY  +++P  T + IN++
Sbjct: 1243 PDTMYNDTYTASDTVLALASFFNKFPEYQNRPFYITGE----SYGGIYVPTLTRALINAI 1298


>U06933-1|AAA64938.1|  551|Caenorhabditis elegans CeSWAP protein.
          Length = 551

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 346 MPWQGDPSNMIDRFDVRAHLDCIP-EIKYPYVPPEDL---SSEERQCNYERY 489
           +P  GDP N +DR+  R  L  I   IK    P E     + EE  C  ERY
Sbjct: 44  VPCLGDPENRVDRYGFRLLLPSIDVAIKRNGSPSEQCPTEAMEEDMCEEERY 95


>Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical
           protein F36F2.3b protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 166 KQERMIRGMIVDYRRRAERRKDFYEKIKAE 255
           K+E   R    DY R  ERRKD YEK K++
Sbjct: 183 KREDKKRDDRKDYERDRERRKDDYEKEKSK 212


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
            F36F2.3a protein.
          Length = 1128

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 166  KQERMIRGMIVDYRRRAERRKDFYEKIKAE 255
            K+E   R    DY R  ERRKD YEK K++
Sbjct: 948  KREDKKRDDRKDYERDRERRKDDYEKEKSK 977


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,284,320
Number of Sequences: 27780
Number of extensions: 274294
Number of successful extensions: 721
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)