Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24i24
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.99 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.2  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 250 AEPTQFLQLHGRPCKIHLDPTIAAAGEGPAIMMPWQGDPSNMI 378
           AE +  L ++G P   H+D     AGE   +  P  G P   I
Sbjct: 480 AEHSARLNVYGLPFIRHMDKKAIVAGETLRVTCPVAGYPIESI 522


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 424 KYPYVPPEDLSSEERQCNYERY 489
           +YP  PP+++ S  R+   +RY
Sbjct: 122 RYPLRPPQEVISHYRRTRRDRY 143


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 184 RGMIVDYRRRAERRKDFYEKIKAEPTQFLQLHGRPCKIHLDPTI 315
           + +I+  +  A   KD YEK K EP   L     P  +  DP +
Sbjct: 47  KDLILVKKSTAHFVKDIYEKYKNEPMVGLYATRSPFLLLNDPEL 90


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 287 GLPCSCKNCVG 255
           G+ CSC  C+G
Sbjct: 82  GMQCSCNKCIG 92


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/19 (31%), Positives = 8/19 (42%)
 Frame = +3

Query: 141 GDYVARGKKTRAYDTWNDR 197
           GDY+           WND+
Sbjct: 44  GDYIEENNMPNGMQIWNDK 62


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 500 ARIL*RS*LHCLSSELKSSGG 438
           + IL +S LHC ++  K+ GG
Sbjct: 249 SEILYKSTLHCWATIYKTEGG 269


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 500 ARIL*RS*LHCLSSELKSSGG 438
           + IL +S LHC ++  K+ GG
Sbjct: 249 SEILYKSTLHCWATIYKTEGG 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,142
Number of Sequences: 438
Number of extensions: 3457
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)