Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24i23
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   2.2  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   2.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   2.2  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   3.8  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   3.8  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    26   3.8  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   5.0  
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual         26   5.0  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   6.6  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   6.6  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   6.6  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   8.7  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.7  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 528 MARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 406
           +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 114 LADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 379 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 474
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +1

Query: 280 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 459
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 460 LSASIQASLPSSEIYRQL 513
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 492 LRDLPPVGRFSPCFLRLLWSLRKILIPYSSQFW 590
           L++L  +G  SPC LRL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 169 KLRALLVVIPRILRSPPPTHPLIEDV 246
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 481 SLPSSEIYRQLVDSRHVSSDSFGVY 555
           +L  S I+R  + S HVSS S GVY
Sbjct: 2   TLLDSSIFRFRLSSLHVSSRSLGVY 26


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 545 KESEETWRESTNWR*ISEEG 486
           KE  E W  + NW+  SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828


>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 502 YRQLVDSRHVSSDSFGVYVKS*SLILHSFGLLV 600
           YRQLVD R ++ D F  + K+    LH   + V
Sbjct: 34  YRQLVDGRELTLDDFISHAKALRTHLHRLDINV 66


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 304 LVTHKELALKVSSIIGTRVYVFDPSCY 384
           +V H E  LKV  II T  Y  D S Y
Sbjct: 37  VVKHHEEFLKVCDIISTFTYQLDASIY 63


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 164 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 250
           + SF PY S F A   P L ++PS+  +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 519 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 418
           ++Q A+ LG   RS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 66  PPLSSEAPSAYLTPSSLGMAKGVSP 140
           PP++++ P  +L P+S   AK V P
Sbjct: 723 PPIATKKPPTFLKPNSPEYAKTVIP 747


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 427 RTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVY 555
           R +LKD     LS S+  SLPS     Q+  +  +S +    Y
Sbjct: 57  RKILKDVSLKRLSKSLDRSLPSENTIDQISFNHAMSEEDASGY 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,671
Number of Sequences: 5004
Number of extensions: 45066
Number of successful extensions: 137
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)