Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc24i23
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ...    29   3.5  
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ...    29   3.5  
Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    28   4.6  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   6.1  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   6.1  

>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
           protein 25, isoformb protein.
          Length = 1130

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 87  EPLMTTEALTPARIPSSTAS 28
           EP++++E L P R+PS+T S
Sbjct: 877 EPILSSEVLQPTRLPSATTS 896


>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
            protein 25, isoforma protein.
          Length = 1237

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 87   EPLMTTEALTPARIPSSTAS 28
            EP++++E L P R+PS+T S
Sbjct: 984  EPILSSEVLQPTRLPSATTS 1003


>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 364 VFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHV-SSD 540
           ++D +C F+   +  + YD I T  +      LS S  AS+ S    R L+ +  V S  
Sbjct: 235 IYDETCVFNYDNYCYIPYDQINTSKQGQSICELSGSNLASIRSGNENRFLMSTVSVFSIF 294

Query: 541 SFGVYVKS*SLIL 579
           + G +  S  LIL
Sbjct: 295 AIGGFAFSDDLIL 307


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 69   PLSSEAPSAYLTPSSLGMAKGVSPP 143
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 69   PLSSEAPSAYLTPSSLGMAKGVSPP 143
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,135,511
Number of Sequences: 27780
Number of extensions: 254741
Number of successful extensions: 765
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)