Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc24i22
(314 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 29 0.77
05_03_0259 - 11161447-11161706,11161764-11164266 29 1.0
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804... 29 1.0
01_01_1125 - 8920590-8924372 29 1.0
06_01_1000 - 7778907-7780721 28 1.8
11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536... 27 3.1
05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488 27 3.1
10_06_0130 - 11055305-11055593,11055666-11055949,11057271-110573... 26 5.4
04_04_0728 - 27608011-27608136,27608345-27608401,27608598-276086... 26 5.4
01_05_0277 + 20310426-20312216 26 5.4
08_02_0238 + 14665813-14668798,14669088-14669125 26 7.1
06_01_0554 - 3945185-3945665,3946122-3947011,3947635-3947967 26 7.1
05_04_0204 - 19022329-19023990 26 7.1
01_06_0638 - 30768546-30768779,30768908-30769017,30769301-307694... 26 7.1
06_03_0008 - 15333772-15333785,15335052-15335517 25 9.4
04_04_0243 - 23858975-23860706,23861178-23861230,23861338-238615... 25 9.4
02_05_0775 + 31681720-31681953,31682106-31682246,31682357-316824... 25 9.4
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 29.1 bits (62), Expect = 0.77
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -3
Query: 300 VIKKFILYSILVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCAS 121
V+ +LY+ LV + +CK G AL VD+Y G+ V + + N L SF
Sbjct: 505 VLPNNVLYTTLVFY------FCKAGHAKEALKYFVDIYRSGL-VANSVIHNALLCSFYRE 557
Query: 120 G 118
G
Sbjct: 558 G 558
>05_03_0259 - 11161447-11161706,11161764-11164266
Length = 920
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 267 VHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGR 115
V + M I YC+RGR A + ++ G+HV V N + C GR
Sbjct: 325 VAYGMMINGYCQRGRMDDATRVRNEMRDAGIHV-NLFVYNTMINGLCKLGR 374
>04_01_0613 -
8042568-8042686,8043107-8043206,8043550-8043594,
8043691-8043770,8045082-8046322,8047077-8047507
Length = 671
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +1
Query: 118 SACAEAQQVMIDNFVFFHMYTADIQIDAKVQCGVRSAAFAIIDDKHLEMYKYRIENK 288
S CA + + + +M +D IDA+V C + + + D + E R+ K
Sbjct: 178 STCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEK 234
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -3
Query: 279 YSI-LVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGRCLAR 103
YS+ L + + + CK G AL LC + G ++ N VI++ +L+ CL
Sbjct: 887 YSVDLAMYSILVEGLCKSGYLEKALDLCESMKEEG--IQPNIVIHNSVLNGLCQQGCLTE 944
Query: 102 IWR 94
+R
Sbjct: 945 AFR 947
>06_01_1000 - 7778907-7780721
Length = 604
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 270 LVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSF-CASG 118
++ F + YCK G+ AL + + G+H N VI + L+ F C G
Sbjct: 458 VITFGTLVHGYCKVGKIDEALRILRSMDESGIH--PNNVIYNTLIDFLCKRG 507
>11_06_0013 -
19252779-19252805,19252947-19253090,19253572-19253663,
19253757-19253835,19253965-19254031,19254163-19254254,
19254986-19255102,19255254-19255365,19255479-19255594,
19255680-19255756,19255912-19255993,19256077-19256214,
19258806-19259009
Length = 448
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 313 FFFHSNKKIYSLFYTC 266
F H NK +YSL YTC
Sbjct: 361 FGLHMNKSLYSLSYTC 376
>05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488
Length = 665
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 196 RFVCRRCTCERKQSYQSLPAELLR 125
RF+C C+C + SY ++ A LL+
Sbjct: 2 RFLCDYCSCVFRGSYSTVKAHLLK 25
>10_06_0130 -
11055305-11055593,11055666-11055949,11057271-11057398,
11058522-11058606,11058917-11060872
Length = 913
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 270 LVHFQMFIVNYCKRGRTHAALHLCVDLYVGGVH 172
+V + I CK G HAAL+L L+ VH
Sbjct: 591 IVTYNTLINGLCKMGWMHAALNLLEKLHNENVH 623
>04_04_0728 -
27608011-27608136,27608345-27608401,27608598-27608665,
27608697-27608793,27610467-27610532,27610788-27611174
Length = 266
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 100 MAMTHSLTSLYFPGRSARDCWFLSCCV 20
M +L L FPG+ + WF CC+
Sbjct: 171 MRREFNLPCLNFPGKILLNTWFNFCCI 197
>01_05_0277 + 20310426-20312216
Length = 596
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 267 VHFQMFIVNYCKRGRTHAALHL 202
V + + YC+RGR ALHL
Sbjct: 246 VTYNTLLSGYCRRGRLQDALHL 267
>08_02_0238 + 14665813-14668798,14669088-14669125
Length = 1007
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 99 IFVRGNVRLRRSSAGND**LCFLSHVHRRHTNR 197
+FV+GN+ L SS LC S H RHT+R
Sbjct: 726 VFVQGNIMLCSSSPMLQLPLCLASSRH-RHTSR 757
>06_01_0554 - 3945185-3945665,3946122-3947011,3947635-3947967
Length = 567
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 75 HYIFLDVQHVTAGSYHVALLVINHF 1
H++F + V G Y VA +++HF
Sbjct: 210 HFLFTQLSSVLLGVYLVAATILDHF 234
>05_04_0204 - 19022329-19023990
Length = 553
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -3
Query: 261 FQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGRCL 109
F + + + CK GR H AL L + N +I H +S + CL
Sbjct: 386 FNIVVHSLCKLGRLHKALFLLRSKEFVATVITYNTLIRHLSISGEGNEVCL 436
>01_06_0638 -
30768546-30768779,30768908-30769017,30769301-30769490,
30769842-30769914,30770007-30770063,30770147-30770211,
30770278-30770488,30770568-30770650,30771123-30771158,
30771611-30771713,30771813-30771899,30772210-30772403
Length = 480
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 204 LCVDLYVGGVHVKENKVINHYLLSFCASG 118
LC + GG+ K K +HY +C SG
Sbjct: 400 LCAQVLDGGLRDKPGKNRDHYHSCYCLSG 428
>06_03_0008 - 15333772-15333785,15335052-15335517
Length = 159
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = -2
Query: 217 RRIAPLRRFVCRRCTCERKQSYQSLPAELLRKRTLPRTNMAMTHSLTSLYFPGRSARD 44
R IAP + + ++ S+P++ LR+ P N++ SL L F D
Sbjct: 24 RVIAPQKTLPTDKPAVPMPPTFNSMPSKTLREFAAPSANISNQPSLKYLVFAQAKTTD 81
>04_04_0243 -
23858975-23860706,23861178-23861230,23861338-23861538,
23861649-23861990,23862277-23862423,23862945-23863086,
23863876-23863959,23864772-23864779
Length = 902
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/51 (25%), Positives = 20/51 (39%)
Frame = -3
Query: 267 VHFQMFIVNYCKRGRTHAALHLCVDLYVGGVHVKENKVINHYLLSFCASGR 115
V + I +C RGR AAL + ++ G + +C GR
Sbjct: 520 VTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGR 570
>02_05_0775 +
31681720-31681953,31682106-31682246,31682357-31682428,
31682513-31682590,31682683-31682736,31682862-31682963,
31683112-31683189,31683322-31683391,31683592-31683662,
31683826-31683918,31684029-31684109
Length = 357
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = -2
Query: 193 FVCRRCTCERKQSYQSLPAELLRKRTLPRTNMAMTHSLTSLYFPGRSARDCWFLSCCVAR 14
F CR +Q+Y L A + R+ T+ A +S RSA D + V +
Sbjct: 21 FACRSAAASMRQTYLDLAAAAVAARSASCTSWADAMRASSPTRSSRSASDVDEFTAWVRK 80
Query: 13 YQS 5
+ S
Sbjct: 81 HPS 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,431,825
Number of Sequences: 37544
Number of extensions: 156692
Number of successful extensions: 538
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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